Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00501 ATGGAAGAATCATGGGAGAACTGGATTTCTCATATGGAAATGGAGGAGGATAATTTGTTCAATCAAGGCCATAGAATAAACTCTCCCAATGAAGTTTTGTGTCACCAAATTGAAAGCCACTATCCTTACCCTTCTTCCACTCTTGTTGAGGCTGCCACCACCAATTTTCAAAGCTCAAATCATCATATCCAAAACAACCCTTCAATTGTAACTGGTGACACAGCATGTTTCCATAGGGTTACATCTCAAAACTCAAAAGATGGTGCAGAAAACACCCTATCCAACCACATTTTGCCTTTGATGAACTCAACTTCACAACAACCACATATAAGCAGCAACATGAAACATGGTTCTGATTTGGGGTCCTTCAAAAGAACACAAGTGAATCATAGTTTGAAGCCTAAGATTCAAAAGAAGGTTAGAAGCTCTTCTGAGATAGCAGATCATATAGTGGCTGAGAGAAAAAGAAGACTGAAACTGACTCAGAATTTCATAGCACTTTCAGCCATCATTCCAGGGTTGAAGAAGACAGACAAGTCTTATATACTTCAAGAAGCAATCAATTATGTGAGTCAACTTCAAGAGCGTGTAAGAGAACTAGAAACTGAGAATGAAAAGATAAATGCATACTCAGCAATACTTGACAAGAAATTGCAGCTCTCTATGAATGAAGACTCAACCTCTTGTGAAGCAAACTCTGCTGGTTATAGATTCACTGAAGCACTACCTGAAGTTACAGCAAGAGTTTCAGAGAAGAATGTGCTCATTTCAATCCACTGTGAGAAGCAAAATGACATAGTGCACAAGATACTGAACTTGCTTACAAAACTCCATCTTTCTATATCCAGTAGTAGCATATTGGAATTTGGTGCTTCCACCCTTAAAATCACAATTATTGCACAGATGGAGGAAGAGTATGGCATGGCAATTGATGATCTGGTGAAAAGCCTGAGGAAAGAATTGCTAAAATCACATGATGTTCCACAATGA 990 0.3859 MEESWENWISHMEMEEDNLFNQGHRINSPNEVLCHQIESHYPYPSSTLVEAATTNFQSSNHHIQNNPSIVTGDTACFHRVTSQNSKDGAENTLSNHILPLMNSTSQQPHISSNMKHGSDLGSFKRTQVNHSLKPKIQKKVRSSSEIADHIVAERKRRLKLTQNFIALSAIIPGLKKTDKSYILQEAINYVSQLQERVRELETENEKINAYSAILDKKLQLSMNEDSTSCEANSAGYRFTEALPEVTARVSEKNVLISIHCEKQNDIVHKILNLLTKLHLSISSSSILEFGASTLKITIIAQMEEEYGMAIDDLVKSLRKELLKSHDVPQ* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00501 329 Coils Coil 183 210 - -
Rops4g00501 329 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 144 193 IPR011598 GO:0046983
Rops4g00501 329 PANTHER BHLH TRANSCRIPTION FACTOR 3 323 - -
Rops4g00501 329 Gene3D - 144 215 IPR036638 GO:0046983
Rops4g00501 329 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 149 210 IPR036638 GO:0046983
Rops4g00501 329 SMART finulus 150 199 IPR011598 GO:0046983
Rops4g00501 329 Pfam Helix-loop-helix DNA-binding domain 149 194 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00501 Rops-Chr4 14072293 14082029 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00501 8 321 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 34.203 7.83e-47 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops4g00501 HLH 4.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00501 - - psat:127076674 284.648