LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops4g00497	ATGAGCACTTCACCACTTTACGTGTATAGGAACATTTTTGCTGAAGATATTGGTCGCACAAAGACCAATGAAGAGATTTATGGTGTTTTGTCTTTGGTGTTTTGGACTGTTACATTGGTGCCTCTGGTGAAGTATGTGTTCATAGTGCTTAAAGCTGATGATAATGGTGAAGGTGGCACGTTTGCACTTTACTCTTTGCTATGTCGCCATGCCCGAGTTGGCTTATTGCCCAATTGCCAATTGGCAGATGAGGAGCTCTCAGAGTACAAGAAGCAATGTTACGATGTAGCACCAAATAGAAGCCTTGCTTTGAGGCTTAGGTCCATGTTGGAGAAACACACGGTGTTGCAGAGGGTTTTGCTGGTTCTGGCTTTGATAGGGACTTGCATGGTGATTGGCGTTGGTATCCTTAAACCGGCTATTTCTGTTTTCTCTGCGGTGTCTGGTCTTGAGCTTTCAATGTCCAAGGAGCATCATAGATATGTAGAAGTTCCAGCTACATGCATCATATTGATAGGCTTATTTTCCCTTCAACGTTATGGCACACATAGGGTTGGCTTCTTGTTCGCTCCTATAGTTTGTACATGGCTTTTCTGCATTGGTGCCATTGGTATATACAATATTTTTTACTGGAATCCTCATGTATACCAAACACTCTCTCCATATTATGTTTTCCAATTTTTAAAGAAGGCTCAGAAAGGAGGTTGGATGGCCCTTGGTGGAATTTTGCTGTGCATAACAGGATCAGAAACTATGTTTGCTGATCTTGGGCACTTTTCACAAGCGTCAATCAAGATTGCTTTCACCTCTGTGGTTTATCCATCTTTAATTCTTGCTTATATGGGACAAGCTGCTTATCTTTCTAGGCATCATGATGTTGAGCAGGAGTATCACTTTGGTTTCTATGTATCTGTACCAGAGAAGTTGAGATGGCCAGTTCTGGTGATAGCCATACTTGCTGCAATTGTGGGAAGCCAATCCATCATCACAGGAACTTTCTCAATCATCAAGCAATGCTCTGCATGGAGTTGCTTCCCAAGAGTTAAAGTGGTTCACACTTCATCCAAAATTCATGGACAAGTGTATATCCCTGGGATCAACTGGCTTTTGATGCTCTTGTGTTTGGCTGTAACTATTGGTTTCAGAGACACAAAACGTATGGGTAATGCATCAGGAATGGACAAGTACGAGAAGTTAGAGAAGGTTGGTGAAGGAACATACGGAAAGGTGTACAAGGCAATGGAGAAATCAAGTGGGCAAGTCGTAGCATTGAAGAAGACCCGTCTCGAGATGGACGAGGAAGGTGTCCCTCCAACTGCCCTCAGAGAAATCTCAATCCTCCAACTGCTCTCAATCCATCTATGTCGTACGCCTCATCGATGTTGA	1386	0.4307	MSTSPLYVYRNIFAEDIGRTKTNEEIYGVLSLVFWTVTLVPLVKYVFIVLKADDNGEGGTFALYSLLCRHARVGLLPNCQLADEELSEYKKQCYDVAPNRSLALRLRSMLEKHTVLQRVLLVLALIGTCMVIGVGILKPAISVFSAVSGLELSMSKEHHRYVEVPATCIILIGLFSLQRYGTHRVGFLFAPIVCTWLFCIGAIGIYNIFYWNPHVYQTLSPYYVFQFLKKAQKGGWMALGGILLCITGSETMFADLGHFSQASIKIAFTSVVYPSLILAYMGQAAYLSRHHDVEQEYHFGFYVSVPEKLRWPVLVIAILAAIVGSQSIITGTFSIIKQCSAWSCFPRVKVVHTSSKIHGQVYIPGINWLLMLLCLAVTIGFRDTKRMGNASGMDKYEKLEKVGEGTYGKVYKAMEKSSGQVVALKKTRLEMDEEGVPPTALREISILQLLSIHLCRTPHRC*	462

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Rops4g00497	461	Pfam	Protein kinase domain	396	453	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Rops4g00497	461	Pfam	K+ potassium transporter	2	393	IPR003855	GO:0015079\|GO:0016020\|GO:0071805
Rops4g00497	461	ProSitePatterns	Protein kinases ATP-binding region signature.	402	425	IPR017441	GO:0005524
Rops4g00497	461	ProSiteProfiles	Protein kinase domain profile.	396	461	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Rops4g00497	461	Gene3D	Phosphorylase Kinase; domain 1	381	455	-	-
Rops4g00497	461	SUPERFAMILY	Protein kinase-like (PK-like)	392	451	IPR011009	-
Rops4g00497	461	PANTHER	OSMOTIC STRESS POTASSIUM TRANSPORTER	1	393	IPR003855	GO:0015079\|GO:0016020\|GO:0071805

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops4g00497	Rops-Chr4	13960352	13961737	Dispersed/Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops4g00497	1	393	Inorganic Solute Cotransporters	AT1G70300	77.215	0.0	649

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-Pl	Rops4g00497		K_trans	1.5e-133	CL0062

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops4g00497	K03549		-	gmx:100817411	714.916

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