Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00495 ATGGGTAATGCATCAGGAATGGACAAGTACGAGAAGTTAGAGAAGGTTGGTGAAGGAACATACGGAAAGGTGTACAAGGCAATGGAGAAATCAAGTGGGCAAGTCGTAGCATTGAAGAAGACCCGTCTCGAGATGGACGAGGAAGGTGTCCCTCCAACTGCCCTCAGAGAAATCTCAATCCTCCAACTGCTCTCAATCCATCTATGTCGTACGCCTCATCGATGTTGA 228 0.4781 MGNASGMDKYEKLEKVGEGTYGKVYKAMEKSSGQVVALKKTRLEMDEEGVPPTALREISILQLLSIHLCRTPHRC* 76
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00495 75 Gene3D Phosphorylase Kinase; domain 1 1 70 - -
Rops4g00495 75 SUPERFAMILY Protein kinase-like (PK-like) 7 65 IPR011009 -
Rops4g00495 75 PANTHER CELL DIVISION PROTEIN KINASE 7 65 - -
Rops4g00495 75 ProSitePatterns Protein kinases ATP-binding region signature. 16 39 IPR017441 GO:0005524
Rops4g00495 75 Pfam Protein kinase domain 10 67 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g00495 75 ProSiteProfiles Protein kinase domain profile. 10 75 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00495 Rops-Chr4 13938140 13938367 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00495 7 70 Core Cell Cycle Gene Families AT3G54180 80.303 1.06e-30 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Rops4g00495 Pkinase 1.2e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00495 K07760 - thj:104806330 110.923