Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00493 ATGGAAGACTTGTGGGAAAAGTGGATTTCTTCTTTGGAAATGGGTGGTGACAAATCCATTGTTCAATCTCACATGGATGAAGAAGAGTTTCTCAATGAGATGGTGCAGTTGCAGCAACCAAGTTTCACTTTTGAGAATGCTGACCACTCTTTTACTATGCAATATAACAATAATGTTTACACTAGCACCATGGATAGTAGCTTATCTTATGAGGAAGATGAAGGGCATGGAAACATGGTCAAGAGTACTAATAGCTCCAACTCTATAATCTCTCAAGATGGTGCTTCACACAAACCTGCAACAACTTCATCTCCAACAACATTTATTTTGTCTTTTGAAAACTCAACTGTGGAACCTGCTCTCCTTAGACCTACCCCAAAACATTTTGGTGGCAATTTGTGCAAAAGAACAACCCTGAATAATGACCATAGCAATGAACCAAAGGGCAAGCAAAGAAACAAGAAGTTTAGAACCTCATCTGAGGCACAAGATCACATAATGGCTGAGAGAAAAAGGAGACAAGAACTCACTCAAAGGTTCATAGCTCTTTCTGCCACCATACCTGGATTGAAGAAGACAGACAAGGCCTATATACTTAGAGAAGCTATCAATTATATGAAACAACTTCAAGAGAGGGTAAAAGAGCTAGAGAATCAGAACAAAAGGAAAACAACAGATTCAGTAATATTCATCAAGAAATCCCAGGTCTGCACAAAAGGGGAAACCACTTCATGTGAAATGAACTCTGATACTGGGCATAGACTCAAGAAAGCACTGCCTCAGGTTGAAGCTAGAGTCTTAGAGAAGGAAGTTCTCATTGGAATCCATTGTGAGAAGCAAGAAGACATTGTACTCAGAATTGTGTCCTTGCTTGAAAATCTTCATCTCTCTCTTGTTAGTAGTAGTGTATTGCCATTTGGGACCTCCACACTAAAAGTCACAATTATTGCTCAGATGGGTGATAAATACAGCATGACAGTGAATGATCTAGTAAAAAGCTTGAGGCAAGATCTCTTGAAGTTACATGACATTCAAAAGTAA 1041 0.39 MEDLWEKWISSLEMGGDKSIVQSHMDEEEFLNEMVQLQQPSFTFENADHSFTMQYNNNVYTSTMDSSLSYEEDEGHGNMVKSTNSSNSIISQDGASHKPATTSSPTTFILSFENSTVEPALLRPTPKHFGGNLCKRTTLNNDHSNEPKGKQRNKKFRTSSEAQDHIMAERKRRQELTQRFIALSATIPGLKKTDKAYILREAINYMKQLQERVKELENQNKRKTTDSVIFIKKSQVCTKGETTSCEMNSDTGHRLKKALPQVEARVLEKEVLIGIHCEKQEDIVLRIVSLLENLHLSLVSSSVLPFGTSTLKVTIIAQMGDKYSMTVNDLVKSLRQDLLKLHDIQK* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00493 346 Coils Coil 199 226 - -
Rops4g00493 346 SMART finulus 166 215 IPR011598 GO:0046983
Rops4g00493 346 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 165 223 IPR036638 GO:0046983
Rops4g00493 346 PANTHER BHLH TRANSCRIPTION FACTOR 38 340 - -
Rops4g00493 346 MobiDBLite consensus disorder prediction 121 165 - -
Rops4g00493 346 MobiDBLite consensus disorder prediction 141 165 - -
Rops4g00493 346 Gene3D - 158 228 IPR036638 GO:0046983
Rops4g00493 346 MobiDBLite consensus disorder prediction 79 102 - -
Rops4g00493 346 MobiDBLite consensus disorder prediction 69 102 - -
Rops4g00493 346 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 160 209 IPR011598 GO:0046983
Rops4g00493 346 Pfam Helix-loop-helix DNA-binding domain 164 210 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00493 Rops-Chr4 13919297 13924205 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00493 1 338 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 35.328 4.81e-49 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops4g00493 HLH 5.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00493 - - gmx:100808919 383.645