Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00473 ATGGCTTCTCCTCCAACTGTGTCATTAAACGACGTCGCATCAGACACGTTTAATACAGTTTCGGGTTCTATTACACCACCACCACCTCGCCGTTCATCTCCGTTACAGAATCTCAGTCCTAGCATTTTAATCATAGTAACGGTTCTCGCCGTTACCGTTATCGTTTCACTCGCTCTTTGTTTTCTTCTCCGGCATCTTAACCGTCGCTGTCTCCGGCGTCTCTCCGCCACGTCCTCCGCACCTGGGACTCCGATCTTCACCTCCAGCCGGCGAATCTCGCCGGAACTTCCTCACTCCGTCATCGACTCGCTCCCGTTGTTCTCTTTTTCTTCTGTTACGCGGCGCTCCTCCGCCGCCTCCGCCGCTGATTGCGCCGTGTGTCTCTCGAAGTTTCAGCACAACGATCTTCTCCGGTTACTACCTCTCTGTTGCCACGCTTTCCATGCTGAGTGCATCGACACGTGGCTTCGATCGAACCTCTCGTGTCCACTTTGCCGATCGGCGATTTTCGCGGCAGATTCCGACCTCGCGAAGGTTCTCCGATCATCGTTAGATGAAAACAGCGGCGACACTTTCAGACTCGAGATAGGTAACATTAGCCGCCGAGGCACCACAGCTCCAGACTCCGCCGGCGCCGGGGAGTCTCGTTCGAGGTCCTATTCCATTGGATCGTTCGAGTATTTGGTGGAAGAGGAATCGGAGGTTCCGCTGAGTCACTCTCACCGGAGAAGCGTCTCCGATCAGAAGGATTTCCTGACGACAGCGGAGTCTCCGTCTAGGAACGAAGCCGCAGCACTCGCCGGCGAGGTTGCCGGAGTTAGAAGCTGGCTCAAGGAATATATGGATAGGGTTTCAGCTTCTATTTCGTCGCGAACGGCGTCGTTTCGAAGTTCTGGAAGGTTCTTCAGTGGTGGCAGTAGTCGCGGAAGCGACGTCGTTCCGGTCGATGTGGATTATGACATGGAAGGTAACCGAATTGGTGAAGAGATATCTGAAATGTTTCGTTGGCTTTCAGGGGTATGA 1023 0.5396 MASPPTVSLNDVASDTFNTVSGSITPPPPRRSSPLQNLSPSILIIVTVLAVTVIVSLALCFLLRHLNRRCLRRLSATSSAPGTPIFTSSRRISPELPHSVIDSLPLFSFSSVTRRSSAASAADCAVCLSKFQHNDLLRLLPLCCHAFHAECIDTWLRSNLSCPLCRSAIFAADSDLAKVLRSSLDENSGDTFRLEIGNISRRGTTAPDSAGAGESRSRSYSIGSFEYLVEEESEVPLSHSHRRSVSDQKDFLTTAESPSRNEAAALAGEVAGVRSWLKEYMDRVSASISSRTASFRSSGRFFSGGSSRGSDVVPVDVDYDMEGNRIGEEISEMFRWLSGV* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00473 340 SUPERFAMILY RING/U-box 100 172 - -
Rops4g00473 340 ProSiteProfiles Zinc finger RING-type profile. 124 166 IPR001841 -
Rops4g00473 340 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 34 256 - -
Rops4g00473 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 170 IPR013083 -
Rops4g00473 340 CDD RING-H2_EL5-like 123 166 - -
Rops4g00473 340 FunFam E3 ubiquitin-protein ligase ATL6 86 172 - -
Rops4g00473 340 SMART ring_2 124 165 IPR001841 -
Rops4g00473 340 Pfam Ring finger domain 123 166 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00473 Rops-Chr4 13666948 13667970 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00473 25 194 C3H Transcription Factor Family AT4G28890 36.364 1.01e-23 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00473 K10663 - gmx:100817751 392.119