Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00439 ATGACTGGATTGAATGATTGCATTATTGCTGGCATAATTGACTTTATCTTTGGTGATGCTTCTGCTGTGTTCCAAAATTGCACCATGGCTATTAGAAAACCCCTAGATAACCAGCAAAACATTGTCACAGCTCAAGGGAGAATTCACAAGCAAGAAAACACTGGCTTTGTTTTCTGGAAGTGTGTGATGAAGGCAGATGACCAACTAGGAGAGGGAGAGTTTAAAACAGAACTCACTTGGGGTCGTAGACCAGCTATGCCAGCTTGGGCCAAAGTTGAGTTGAAGGTCTCCTACCAAGGTGGTCCAGTTAGGCCAGCCAAGGCTAAGAAAAGGATGACCTCAAGCCATTATGGCTCCCTTATCCGTCGCAACCTGAGTTGA 381 0.4514 MTGLNDCIIAGIIDFIFGDASAVFQNCTMAIRKPLDNQQNIVTAQGRIHKQENTGFVFWKCVMKADDQLGEGEFKTELTWGRRPAMPAWAKVELKVSYQGGPVRPAKAKKRMTSSHYGSLIRRNLS* 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00439 126 Gene3D - 3 119 IPR012334 -
Rops4g00439 126 Pfam Pectinesterase 5 77 IPR000070 GO:0030599|GO:0042545
Rops4g00439 126 SUPERFAMILY Pectin lyase-like 5 71 IPR011050 -
Rops4g00439 126 PANTHER PECTINESTERASE 5 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00439 Rops-Chr4 13075492 13082629 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00439 4 66 Carbohydrate Esterase AT3G05610 55.556 5.62e-20 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00439 - K01051 gmx:100796485 109.383