Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00425 ATGCAATTGGAGAACTTCTACAACATATTTGATGCAACAAAGCTCAAAAGTATGTTTTGGAGTACATGGCAGCCATTAGAATCACCATGCTTGTTGGAGGATATAATTTTTCCTGTGGAACTTGGTTTCTTTGTGATCTTGTTAGTCCAACTCCTAAGAAAAGGTGTAGCCCGGATCAGCAAGCAAAACAAGGTCTCAGATCATGCCAAAGAGATGCATCCAAATGCAATAAAATATGGTTTTGCTTACAAACTCAGCTTAGTTTGCACCACTTTATTGGTTGCTGTTCATGCCTTAATGCTATCACTGATGCTCAATCATGAGACTCAATGTACCTCTAAACTTCAGGCTTTTACATCAGAGATAATTCAAGTGTTATCATGGGCAATTAGTCTAATAGCAATATGGAAGCTATCAAAATCAAATACTCATTTCCCTTGGATTCTAAGGGCTTGGTGGCTTTGTAGTTTCCTTTTGAGCATTATCAGCACTGCCCTTCATTCCCATTTCAGTGTGAGCAGCAAGGGTCAGATTGGTACAAGAGAATATGCAGATTTCCTTGGTTTGCTTGCTTCAACATGCCTTTTAGTTATTTCAGCAAGAGGGAAAACAGGCTTTGTCTTAATTGCCACAGATGGTATATCTGAACCACTTCTAGGAGAGAAAACTGAGAAAAATTCTAAGTGTCAAAGGGAATCTCCATATGGAAAAGCTACTCTTCTCCAACTCATTAACTTCTCCTGGCTCAATCCATTGTTTGCCATAGGGTATAAGAAACCCCTTGAACAGAAAGACATTCCTGATGTTGACATCAAGGACTCTGCTGAATTTGTAAACTGCTCCTTTGAGGAAAAACTTAGGCAAGTTAAGGAGAGAGATGGGACTACAAATCCATCTATCTACAAGGCTATCTATTTATTTGCTAGGAACAAAGCAGCAATCAATGCACTTTTTGCAATAGTAAATGCTTCAGCATCATATGTTGGTCCATACTTGATTACTGACTTTGTGGATTTCCTTGGAGAAAAGGAAATCCGGGGATTAAAGACTGGTTACCTTCTCTCATTAGCCTTCTTCTGTGCCAAAATGATTGAGACTACAGCTCAGAGGCAATGGATTTTCGGTGCCCGGCAATTAGGCCTTCGCCTTAGAGCTGCATTGATATCTCATATATATAAGAAAGGCTTAGATCTTTCAAGTAGATCGCGTCAGAGTCACACAGGTGGTGAGATAATGAACTATATGAGTGTAGATGTGCAGAGAATTACAGATTTTGTTTGGTATGTGAATGTAATATGGATGCTGCCTATACAAATTTCCTTAGCTGTCTTCATTTTGCATACAAATCTTGGATTAGGTTCATTGGCTGCATTAGCTGCTACACTGGCAGTTATGGCTTTGAACATACCTCTTACAAAGATCCAAAAAAAATACCAAGCCAAGATCATGGAGGCTAAGGACAACAGAATGAAAGCCACTTCAGAAGTTCTAAGAAACATGAGGACTTTGAAACTTCAAGCATGGGATAGTCAATTTTTCCAAAGGATAGAATCATTGAGGAAAGTAGAGTATGATTGGTTGTTGAAGTCATTAAGGCAAGCAGCATTTTCTGCTTTTATCTTCTGGGGATCACCTGCATTCATTTCTGTGATAACCTTTTGGGCATGCATGTTCATGGGGATTGAGTTGACAGCTGGAAGGGTCTTATCAGCATTTGCCACATTTAGAATGTTGCAGGATCCTATATTCAGTTTACCTGATTTACTCAATGTCATTGCTCAAGGAAAAGTTTCAGTTGATAGGATTGCTTCTTTCCTTATGGAAGAAGAAATCCAACATGATGTCATTGAATATGTTGCAAAGGAAAGAACAGAATTTGATGTAGTTATTGAGAAAGGGAGATTCAGCTGGGATCCTGAGTCAAATAGTCCAACCATTGATGAAATAGAGTTAAAAGTAAAGAGAGGAATGAAGGTGGCAATCTCTGGATCTGTAGGTTCAGGAAAGTCTAGTCTGCTCTCAGGCATTTTGGGAGAAATATATAAACAATCTGGGACAGTTAAGATTAGTGGAACAAAAGCTTATGTTCCACAATCAGCATGGATATTGACTGGAAATATAAGGGACAATATTACCTTTGGAAAAGAGTACAATGATGATAAGTATGAGAAAACTGTTGAGGCATGTGCATTGAAAAAGGACTTTGAGCTATTCTCTTGTGGTGACCTGACAGAGATTGGAGAAAGAGGGATTAACATGAGTGGAGGACAGAAACAAAGGATTCAGATAGCTAGAGCAGTTTACCAAGATGCTGACATATACCTTTTTGATGATCCTTTTAGTGCTGTTGATGCTCATACTGGCACCCATCTCTTTAAGGAGTGCCTTATGGGGATACTCAAAGAGAAAACTATACTTTTTGTTACACACCAAGTTGAGTTTCTTCCAGCAGCAGACCTCATTCTGGTGATGCAAAATGGAAGGATTGCACAAGCTGGAACTTTTGAAGAACTTCTAATGCAAAATATAGGATTTGAAGTTTTAGTTGGTGCTCATAGCAAAGCTCTAGAGTCAGTTCTTATGGTTGAAAATTCTAGAACAAATTTAAATCCAATAGCTGAAGGGGAATCCAACATCAACTCCAGTTCGAATGCTAAACTCATGCCCATACAGCATGACACAGTGCAAGATAATCCAAAAGAGAGCAAAGGAAATGATGGAAAGTTGGTGCAAGAAGAAGAAAGAGAAACAGGAAGCATATCAAAAGAAGTTTACTGGTCTTATTTGACCACTGTTAAAGGGGGAATATTGGTTCCACTCATACTCTTGGCACAATCTTCATTCCAAATACTTCAGATTGCAAGTAACTATTGGATGGCTTGGGTTTGTCCTGCAACAAGTGATGCTAAGCCTTTATTTGAGATGAATTTCATTCTACTTATTTATATGCTACTGTCTGTTGCTGGTGCATTTTGTGTTCTGATAAGAGCAATGTTGGTGTTAAATGCTGGACTTTGGACAGCACAGACACTTTTCACAAGAATGTTGCATAATGTGCTCAGAGCCCCCATGTCATTTTTTGATTCAACCCCAACTGGAAGAATCTTCAATAGGGCCTCCACAGATCAAAGTGTGTTAGACTTGGAAATGGCAAACAAAATAGGATGGTGTGCTTTCTCAGTCATACAGATTCTAGGCACTGTTGCAGTAATGTCTCAGGTGGCATGGCAAGTATTTGTCATCTTCATTCCAGTAATTGCAGTTTGCATATGGTATCAAAGATATTATACACCAACAGCAAGAGAACTGGCTCGGATTGCACAGATACAATTTACTCCAATTCTCCACCATTTTTCAGAATCTTTAGCAGGAGCAGCATCAATAAGAGCTTTTGATCAAGAAGGCCGTTTCACAAACACAAATCTTGACCTTGTGGATGGCTTCTCAAGGCCATGGTTTCATAATGTGTCTGCAATGGAATGGCTTTCTTTCAGATTAAACATACTTTCAAATTTAGTTTTTGCCTTCTCACTGGTCTTGCTAGTCAGCCTCCCTGAAGGAATACTCAATCCAAGCATTGCGGGGTTGGCAGTAACATATGGAATCAATCTAAATGTCTTGCAAGCTTCAGTTATATGGAACATATGTAATGCAGAAAACAAGATGATATCAGTTGAAAGAATTCTTCAATATACAAATATAGCAAGTGAAGCACCTCTTGTGATTCAAGACTGCAGGCCACCAAGAAACTGGCCAGAAACTGGAACAATATGTTTCCAAAATTTGCAGATACGTTATGCTGAACATCTCCCATCTGTGTTGAAAAACATCACTTGCACATTTCCTGGAAGGAAGAAAATTGGTGTTGTAGGACGAACTGGGAGTGGAAAATCAACCCTCATACAGGCCATTTTCAGGACTGTTGAACCAAGAGAGGGAAGGATTATAATTGACAATGTGGACATATGCAAGATTGGTCTCCATGACTTGAGGTCAAGGCTTAGCATTATCCCACAAGACCCTGCCTTGTTTGAAGGCACAGTTAGAGGAAACCTGGATCCACTGGAGCAATATTCTGATATTGAAGTGTGGGAGGCACTTGATAAATGTCAGCTAGGTCACCTAGTGAGGGCAAAGGAAGAGAAGTTGGACTCCCCAGTGGTTGAAAATGGTGATAACTGGAGTGTGGGACAAAGACAACTATTTTGCCTTGGAAGAGCCTTGCTGAAGAAAAGCAGCATATTAGTACTTGATGAAGCAACAGCCTCAGTGGATTCTGCAACTGATGGGGTGTTACAGAATATCATCAGTCATGAGTTCAAAGATCGGACTGTTGTCACAATAGCTCATCGAATCCACACAGTTATTGATAGTGATTTGGTTTTGGTACTCAGTGATGGGAGAATTGCAGAGTATGATGAACCATCAAAGTTACTTGAAAGAGAAGATTCCTTCTTCTTCAAACTTATAAGGGAGTATTCAAGCAGATCACAAAGCTTCAACAACTTGGCAACTCAACAAATCCAAAACAGGCAATAA 4539 0.3946 MQLENFYNIFDATKLKSMFWSTWQPLESPCLLEDIIFPVELGFFVILLVQLLRKGVARISKQNKVSDHAKEMHPNAIKYGFAYKLSLVCTTLLVAVHALMLSLMLNHETQCTSKLQAFTSEIIQVLSWAISLIAIWKLSKSNTHFPWILRAWWLCSFLLSIISTALHSHFSVSSKGQIGTREYADFLGLLASTCLLVISARGKTGFVLIATDGISEPLLGEKTEKNSKCQRESPYGKATLLQLINFSWLNPLFAIGYKKPLEQKDIPDVDIKDSAEFVNCSFEEKLRQVKERDGTTNPSIYKAIYLFARNKAAINALFAIVNASASYVGPYLITDFVDFLGEKEIRGLKTGYLLSLAFFCAKMIETTAQRQWIFGARQLGLRLRAALISHIYKKGLDLSSRSRQSHTGGEIMNYMSVDVQRITDFVWYVNVIWMLPIQISLAVFILHTNLGLGSLAALAATLAVMALNIPLTKIQKKYQAKIMEAKDNRMKATSEVLRNMRTLKLQAWDSQFFQRIESLRKVEYDWLLKSLRQAAFSAFIFWGSPAFISVITFWACMFMGIELTAGRVLSAFATFRMLQDPIFSLPDLLNVIAQGKVSVDRIASFLMEEEIQHDVIEYVAKERTEFDVVIEKGRFSWDPESNSPTIDEIELKVKRGMKVAISGSVGSGKSSLLSGILGEIYKQSGTVKISGTKAYVPQSAWILTGNIRDNITFGKEYNDDKYEKTVEACALKKDFELFSCGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLFDDPFSAVDAHTGTHLFKECLMGILKEKTILFVTHQVEFLPAADLILVMQNGRIAQAGTFEELLMQNIGFEVLVGAHSKALESVLMVENSRTNLNPIAEGESNINSSSNAKLMPIQHDTVQDNPKESKGNDGKLVQEEERETGSISKEVYWSYLTTVKGGILVPLILLAQSSFQILQIASNYWMAWVCPATSDAKPLFEMNFILLIYMLLSVAGAFCVLIRAMLVLNAGLWTAQTLFTRMLHNVLRAPMSFFDSTPTGRIFNRASTDQSVLDLEMANKIGWCAFSVIQILGTVAVMSQVAWQVFVIFIPVIAVCIWYQRYYTPTARELARIAQIQFTPILHHFSESLAGAASIRAFDQEGRFTNTNLDLVDGFSRPWFHNVSAMEWLSFRLNILSNLVFAFSLVLLVSLPEGILNPSIAGLAVTYGINLNVLQASVIWNICNAENKMISVERILQYTNIASEAPLVIQDCRPPRNWPETGTICFQNLQIRYAEHLPSVLKNITCTFPGRKKIGVVGRTGSGKSTLIQAIFRTVEPREGRIIIDNVDICKIGLHDLRSRLSIIPQDPALFEGTVRGNLDPLEQYSDIEVWEALDKCQLGHLVRAKEEKLDSPVVENGDNWSVGQRQLFCLGRALLKKSSILVLDEATASVDSATDGVLQNIISHEFKDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDEPSKLLEREDSFFFKLIREYSSRSQSFNNLATQQIQNRQ* 1513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00425 1512 FunFam ABC transporter C family member 5 901 1238 - -
Rops4g00425 1512 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 623 842 IPR027417 -
Rops4g00425 1512 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 624 851 IPR003439 GO:0005524
Rops4g00425 1512 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1249 1486 IPR027417 -
Rops4g00425 1512 CDD ABC_6TM_ABCC_D2 938 1232 IPR044726 GO:0140359
Rops4g00425 1512 Gene3D - 626 856 IPR027417 -
Rops4g00425 1512 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 940 1220 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops4g00425 1512 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1257 1491 IPR003439 GO:0005524
Rops4g00425 1512 Gene3D ABC transporter type 1, transmembrane domain 901 1238 IPR036640 GO:0005524|GO:0016020
Rops4g00425 1512 Gene3D ABC transporter type 1, transmembrane domain 285 612 IPR036640 GO:0005524|GO:0016020
Rops4g00425 1512 CDD ABCC_MRP_domain2 1255 1475 - -
Rops4g00425 1512 Pfam ABC transporter 1274 1422 IPR003439 GO:0005524
Rops4g00425 1512 MobiDBLite consensus disorder prediction 896 913 - -
Rops4g00425 1512 FunFam ABC transporter C family member 5 613 860 - -
Rops4g00425 1512 Coils Coil 475 495 - -
Rops4g00425 1512 Pfam ABC transporter transmembrane region 950 1184 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops4g00425 1512 Pfam ABC transporter transmembrane region 314 577 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops4g00425 1512 Gene3D - 1240 1492 IPR027417 -
Rops4g00425 1512 FunFam ABC transporter C family member 10 296 610 - -
Rops4g00425 1512 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 237 1494 - -
Rops4g00425 1512 FunFam ABC transporter C family member 3 1240 1492 - -
Rops4g00425 1512 CDD ABC_6TM_ABCC_D1 314 602 IPR044746 GO:0140359
Rops4g00425 1512 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 313 594 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops4g00425 1512 SMART AAA_5 1283 1475 IPR003593 GO:0016887
Rops4g00425 1512 SMART AAA_5 655 828 IPR003593 GO:0016887
Rops4g00425 1512 CDD ABCC_MRP_domain1 628 828 - -
Rops4g00425 1512 Pfam ABC transporter 647 780 IPR003439 GO:0005524
Rops4g00425 1512 SUPERFAMILY ABC transporter transmembrane region 312 606 IPR036640 GO:0005524|GO:0016020
Rops4g00425 1512 MobiDBLite consensus disorder prediction 893 913 - -
Rops4g00425 1512 SUPERFAMILY ABC transporter transmembrane region 926 1235 IPR036640 GO:0005524|GO:0016020
Rops4g00425 1512 ProSitePatterns ABC transporters family signature. 753 767 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00425 Rops-Chr4 12572504 12583575 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00425 622 839 Calmodulin-binding Proteins AT2G36910 30.342 1.39e-21 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00425 - - gmx:100809749 2615.11