Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00387 ATGCTTCACCATGGTATTGCACAAGCCTCACCACCAGGAAGCAGAACTCTATCCATGCAACTCGTGTTGCAGCATGCATGTCCTTGGGACTTCGTGGGAGATGAACCAGCGGCAAGGGTCCCTTCTTCGTGGTGCAGCACCTACTTTCTTCCTGCACAAACTCTTTTCTTTCCAGCCCCCACCGACCCCATCAGCCGTCACCACAGTGAGCCCACCCGCACCAAGACTAGCTGCAGCGAACCTTCAAAGGTGAATGCTCCTAACTTCATGGCCAAGGATGTTGGGTTTGAGAACACAGCAGGAGCTGAGAAGCACCAAGCCGTTGCACTTAGCGTAACTGCAGATCAAGCCGTGTTTTCCAACTTTGGAGTTTTCCAGAACCGCGAGCTGATTGTGAAGGAACCCATGGAGAATCAACAATGCATGGTGACAGGGCCAAAGCCTACAGCCCTAGTGCACTTGTGTTCCGGAGTTGCCACTTCGCAGGGGAACCCTCTTGAACCCCAAGGTAGCGTGTCTTGGAAGGCCACGGAGGGTGCATTCCAAGGTGTTAAAACCGTAACACCTTTTGAGGCTGCTGATTATTATCCAGGGAGGTCTTATGGACTCGCTAATTCGACTCAACGTGATGCTTGGATTGTCGAGTCTGGGGTCCCTTACGTTCTAGGATTCCTTCCCAACCTTCTCGTCCCAACAAAGTCGCTGACATCGTTGATAACAAGGACGCCGTTTCCAGGCTCCAAGTCATTGCTCGTGCTGGATGAATCTGACTGCATGGCATCGGGAGCACAGCAAGCTTTGAGAAGGACAATGGAGATATATTCTAATTCTGTTTGTTTTGCTCTCGTTTGCAATACATCTCCTAAGATCATTGAACCGATTCAGAGCAGATGTGCCATTGTGCGGGTTTCACGCTTATCTGATCAAGAGATATCGGATCGCCTCATGGTTGTGGTTCAAGCAGAGAAGGATCATTTTCACCGCTGA 987 0.5056 MLHHGIAQASPPGSRTLSMQLVLQHACPWDFVGDEPAARVPSSWCSTYFLPAQTLFFPAPTDPISRHHSEPTRTKTSCSEPSKVNAPNFMAKDVGFENTAGAEKHQAVALSVTADQAVFSNFGVFQNRELIVKEPMENQQCMVTGPKPTALVHLCSGVATSQGNPLEPQGSVSWKATEGAFQGVKTVTPFEAADYYPGRSYGLANSTQRDAWIVESGVPYVLGFLPNLLVPTKSLTSLITRTPFPGSKSLLVLDESDCMASGAQQALRRTMEIYSNSVCFALVCNTSPKIIEPIQSRCAIVRVSRLSDQEISDRLMVVVQAEKDHFHR* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00387 328 Pfam DNA polymerase III, delta subunit 234 306 - -
Rops4g00387 328 MobiDBLite consensus disorder prediction 65 84 - -
Rops4g00387 328 Pfam Pectinesterase 75 121 IPR000070 GO:0030599|GO:0042545
Rops4g00387 328 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 243 324 - -
Rops4g00387 328 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 235 324 IPR027417 -
Rops4g00387 328 Gene3D - 231 304 IPR027417 -
Rops4g00387 328 Gene3D - 59 127 IPR012334 -
Rops4g00387 328 SUPERFAMILY Pectin lyase-like 69 145 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00387 Rops-Chr4 11667762 11669004 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00387 245 323 Core DNA Replication Machinery Family AT1G63160 73.418 3.50e-32 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00387 K10755 - pvy:116109655 121.324