Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00378 ATGGGTAATTTGGAGAGATTCATTAACCATAGTTGCTCCCCTAATCTTTTTGCTCAGAATGTTCTATATGATCATGATGACAGTAGGATTGCGTACATAATGCTGTTTGCTGCTGAGAACATTCCTCGTGTGCAAGAACTGACTTACCATTACAGGATAGATCAAGTATATGATTCTCATGGGAATATAAAGAAGAAGAATTGCTATTGTGGTGCTCCAGAGTGTACTGTTATGGCAAAGATGACATATAAAAAGTCGGCTTGGAATTACAACGATACTCAAGCTATGCAATTTCATCTTGAGATGTTTCTGGATATAGATATGTAG 327 0.37 MGNLERFINHSCSPNLFAQNVLYDHDDSRIAYIMLFAAENIPRVQELTYHYRIDQVYDSHGNIKKKNCYCGAPECTVMAKMTYKKSAWNYNDTQAMQFHLEMFLDIDM* 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00378 108 ProSiteProfiles Post-SET domain profile. 64 80 IPR003616 -
Rops4g00378 108 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 1 74 - -
Rops4g00378 108 ProSiteProfiles SET domain profile. 1 52 IPR001214 GO:0005515
Rops4g00378 108 Gene3D SET domain 1 78 IPR046341 -
Rops4g00378 108 Pfam SET domain 1 51 IPR001214 GO:0005515
Rops4g00378 108 SUPERFAMILY SET domain 1 75 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00378 Rops-Chr4 11443387 11443861 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00378 2 75 EF-hand Containing Proteins AT5G13960 55.263 4.70e-23 90.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Rops4g00378 SET 9.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00378 K11420 - fve:101300058 131.724