Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00362 ATGGGTAATTTGGAGAGATTCATTAACCATAGTTGCTCCCCTAATCTTTTTGCTCAGAATGTTCTATATGATCATGATGACAGTAGGATTGCGTACATAATGCTGTTTGCTGCTGAGAACATTCCTCGTGTGCAAGAACTGACTTACCATTACAAGATAGATCAAGTATATGATTCTCATGGGAATATAAAGAAGAAGAATTGCTATTGTGGTGCTCCAGAGTGTACTGGTAGGATGTATTGA 243 0.3786 MGNLERFINHSCSPNLFAQNVLYDHDDSRIAYIMLFAAENIPRVQELTYHYKIDQVYDSHGNIKKKNCYCGAPECTGRMY* 81
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00362 80 ProSiteProfiles Post-SET domain profile. 64 80 IPR003616 -
Rops4g00362 80 Pfam SET domain 1 51 IPR001214 GO:0005515
Rops4g00362 80 SUPERFAMILY SET domain 1 77 IPR046341 -
Rops4g00362 80 ProSiteProfiles SET domain profile. 1 52 IPR001214 GO:0005515
Rops4g00362 80 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE EGGLESS 1 80 - -
Rops4g00362 80 Gene3D SET domain 1 80 IPR046341 -
Rops4g00362 80 SMART PostSET_3 64 80 IPR003616 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00362 Rops-Chr4 10947989 10948231 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00362 2 80 EF-hand Containing Proteins AT5G13960 54.321 5.46e-24 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Rops4g00362 SET 3.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00362 K11420 - pop:18096889 140.198