Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00356 ATGGCTGAGGAGCACCGTTTGGTGGGTGACGATGTAGCCCGAGACTGTTTTCCTGTGGGTATGCGTGTTCTGGCGGTTGATGATGACCAGTTTTCTCTCAAAGTGTTGGAGAACCTACTTCGCAAATGCAAGTATCATGTTACGACAACTACTCAATCAACTATGGCGCTAGAAATGTTGAGGAAGAACAGAAACAAGTTTGACCTCCTTATCAGTGACGTGAATATGGTAGAAATGGATGGATTTAAGCTCCTTGAGCAAGTGGTACCAATGGACCTACCTGTCATAATGCTGTCAGGTTACAATGATAAAGACTGGGTGAAGAAAAGTGTCATCCTTGGTGCATGTTATTATTTAACAAAACCGGTTCGAATTGAAGAGCTGCGGAACATTTGGCAGCATGTACTGCGGAAAAAGATTCAGCGCAAGGAGCATAATAAGGCTGTGATTGAGGATAAACCATGCAATGTAGCTGGAGAAGGTAGTCAAGGCATTGCAAAGGTGGGTCAGAAAAGGAAGGAACAAAAAGAGGAACTGGAAGAAGATGGACAAGAGAAAGCAGCACACTCAACTCGGAAGAAGCCTCGTCTAATTTGGACTGATGAGTTGCATAGAAGATTTGTTGCTGCTGTTAATCAACTGGGACTTGACAAGGCTTTTCCTAAGAGAGTACTAGAATTGATGAAGGTTGAAGGGCTTACAAAGGAAAATGTAGCAAGCCATCTTCAGAAATACAAAGTCGGTCTCAAAAAGCCAACCAAACAGGCTAGTATGGTTGCTGCATTGGGTAATAGTAATCCTTACGTACAGATGGGTTCTGCAGATGGATCTGGAGATTTTCACACCTGGACTGGATCGAGAAGAATCTTAAGCCACACTTTATCATCAAATGCATCAAGTGGAATATCCTACGGCTTGAACTCCACATTTGGCTTGAACTTGAGAGGAATTAATTCTTCTGCACTGCTCCAGCCAGTTCATTCTCAGAATTTACCAATTACATATCATTCAGGAGCATTAAGAAACCACTCTTCTGTTGGAGCTGTTTCTGTGAGCCCAGCATTTTCCTACCCTGGTATCAGTGCTTCTCCCGAAATATTAGATTATAATGGGTCCAAGCAAAACGAGGAGACATTCATAAACGGAGGAATGGAATTTGATCCTCTCTCCTTCTTGAATGATACATTTGATCCCATCTTGTAA 1203 0.4256 MAEEHRLVGDDVARDCFPVGMRVLAVDDDQFSLKVLENLLRKCKYHVTTTTQSTMALEMLRKNRNKFDLLISDVNMVEMDGFKLLEQVVPMDLPVIMLSGYNDKDWVKKSVILGACYYLTKPVRIEELRNIWQHVLRKKIQRKEHNKAVIEDKPCNVAGEGSQGIAKVGQKRKEQKEELEEDGQEKAAHSTRKKPRLIWTDELHRRFVAAVNQLGLDKAFPKRVLELMKVEGLTKENVASHLQKYKVGLKKPTKQASMVAALGNSNPYVQMGSADGSGDFHTWTGSRRILSHTLSSNASSGISYGLNSTFGLNLRGINSSALLQPVHSQNLPITYHSGALRNHSSVGAVSVSPAFSYPGISASPEILDYNGSKQNEETFINGGMEFDPLSFLNDTFDPIL* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00356 400 MobiDBLite consensus disorder prediction 167 192 - -
Rops4g00356 400 PANTHER TWO-COMPONENT RESPONSE REGULATOR 21 294 IPR045279 GO:0009736
Rops4g00356 400 ProSiteProfiles Response regulatory domain profile. 22 136 IPR001789 GO:0000160
Rops4g00356 400 Pfam Response regulator receiver domain 23 131 IPR001789 GO:0000160
Rops4g00356 400 Gene3D - 20 153 - -
Rops4g00356 400 MobiDBLite consensus disorder prediction 161 192 - -
Rops4g00356 400 PIRSF RR_ARR_type-B 1 376 IPR017053 GO:0003677|GO:0003700|GO:0009736
Rops4g00356 400 Pfam Myb-like DNA-binding domain 199 246 IPR001005 -
Rops4g00356 400 SUPERFAMILY Homeodomain-like 191 251 IPR009057 -
Rops4g00356 400 FunFam Two-component response regulator 190 252 - -
Rops4g00356 400 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 191 250 IPR017930 -
Rops4g00356 400 SUPERFAMILY CheY-like 20 146 IPR011006 -
Rops4g00356 400 NCBIfam myb-like DNA-binding domain, SHAQKYF class 194 246 IPR006447 GO:0003677
Rops4g00356 400 CDD REC_typeB_ARR-like 23 136 - -
Rops4g00356 400 Gene3D - 190 251 - -
Rops4g00356 400 SMART REC_2 21 132 IPR001789 GO:0000160
Rops4g00356 400 Coils Coil 165 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00356 Rops-Chr4 10706886 10708770 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00356 13 319 Response Regulator Gene Family AT2G25180 50.311 4.33e-89 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Rops4g00356 Response_reg 6.8e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00356 K14491 - gmx:100776075 375.941