Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00354 ATGGCTGAGGGGCACCGTTTGGTGGGTGACGATGTAGCCCGAGACTGTTTTCCTGTGGGTATGCGTGTTCTGGCAGTTGATGATGACCAGTTTTCTCTCAAAGTGTTGGAGAACCTACTTCGCAAATGCAAGTATCATGTTACGACAACTACTCAATCAACTATGGCGCTAGAAATGTTGAGGAAGAACAGAAACAAGTTTGACCTCCTTATCAGTGACGTGAATATGGTAGAAATGGATGGATTTAAGCTCCTTGAGCAAGTGGTACCAATGGACCTACCTGTCATCATGCTGTCAGGTTACAATGATAAAGACTGGGTGAAGAAAAGTGTCATACTTGGTGCATGTTATTATTTAACAAAACCGGTTCGAATTGAAGAGCTGCGGAACATTTGGCAGCATGTACTGCGGAAGAAGATTCAGTGTAAGGAGCATAATAAGGCTGTCATTGAGGATAAACCCTGCAATGTTGCTGGAGAAGAGAGTCAAGACATTGCATATGAAGATAATGTTAACCAGAATACGAAGGTGGGTCAGAAAAGGAAGGAACAAAGAGAGGAACCGGAAGAAGATGGACAAGAGAAAGAAGCACGTTCAACTCGGAAGAAGCCTCGTCTAATTTGGACTGATGAGTTGCATGGAAGATTTGTTGCTGCTGTTAATCAACTGGGACTTGACAAGGCTTTTCCTAAGAGAATACTAGAATTGATGAAGGTTGAAGGGCTGACAAGGGAAAATATAGCAAGCCATCTGCAGAAATACAAACTGTGTCTCAAAAGGCCAACAAAACAGGCTAGTATGGTTGCTGCATTGGGTAACAGTAATCCTTATGTACAGATGGGTTCTGCAGATGGATATGGAGATTTACACACCTGGACTGGATCTAGAAAAATCTTAGGCAACAATCTATCATCGAATGCATCTGGTGGAATATCCTATGGCTTGAACTCCACATTTGGCTTGAACTTGAGAGGTATTAATTCTTCTGCACTGCTCCAGCCAGTTCATTCTCAGAATTTACCAATTATACATCATTCAGGAGCATTAAGAAACTACTCTTCTGTTGGAGCTGTTTCTGTGAGCCCAACATTTTTCAACCTCAGTATTGGAGCTTCTCCTGAATTATTAGATTATAATGGGTCTAAGAAAAACGAGGAGACATTCATAGATGGAGAAATGGAATTTGATTCTCTCCTCTTCTTGAATGATACATTTGATCCCATCTTGTAA 1230 0.4146 MAEGHRLVGDDVARDCFPVGMRVLAVDDDQFSLKVLENLLRKCKYHVTTTTQSTMALEMLRKNRNKFDLLISDVNMVEMDGFKLLEQVVPMDLPVIMLSGYNDKDWVKKSVILGACYYLTKPVRIEELRNIWQHVLRKKIQCKEHNKAVIEDKPCNVAGEESQDIAYEDNVNQNTKVGQKRKEQREEPEEDGQEKEARSTRKKPRLIWTDELHGRFVAAVNQLGLDKAFPKRILELMKVEGLTRENIASHLQKYKLCLKRPTKQASMVAALGNSNPYVQMGSADGYGDLHTWTGSRKILGNNLSSNASGGISYGLNSTFGLNLRGINSSALLQPVHSQNLPIIHHSGALRNYSSVGAVSVSPTFFNLSIGASPELLDYNGSKKNEETFIDGEMEFDSLLFLNDTFDPIL* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00354 409 NCBIfam myb-like DNA-binding domain, SHAQKYF class 203 256 IPR006447 GO:0003677
Rops4g00354 409 MobiDBLite consensus disorder prediction 175 202 - -
Rops4g00354 409 Gene3D - 199 260 - -
Rops4g00354 409 MobiDBLite consensus disorder prediction 161 202 - -
Rops4g00354 409 Pfam Myb-like DNA-binding domain 208 255 IPR001005 -
Rops4g00354 409 ProSiteProfiles Response regulatory domain profile. 22 136 IPR001789 GO:0000160
Rops4g00354 409 Gene3D - 20 153 - -
Rops4g00354 409 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 200 259 IPR017930 -
Rops4g00354 409 Pfam Response regulator receiver domain 23 131 IPR001789 GO:0000160
Rops4g00354 409 PIRSF RR_ARR_type-B 1 385 IPR017053 GO:0003677|GO:0003700|GO:0009736
Rops4g00354 409 PANTHER TWO-COMPONENT RESPONSE REGULATOR 21 302 IPR045279 GO:0009736
Rops4g00354 409 SUPERFAMILY Homeodomain-like 200 260 IPR009057 -
Rops4g00354 409 SUPERFAMILY CheY-like 20 145 IPR011006 -
Rops4g00354 409 CDD REC_typeB_ARR-like 23 136 - -
Rops4g00354 409 SMART REC_2 21 132 IPR001789 GO:0000160
Rops4g00354 409 FunFam Two-component response regulator 199 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00354 Rops-Chr4 10648185 10650094 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00354 13 358 Response Regulator Gene Family AT2G25180 48.034 9.16e-89 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Rops4g00354 Response_reg 7.1e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00354 K14491 - gmx:100776075 381.333