Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00347 ATGCTCAAGCTCCAGCTCACTGTCACGGAAGAAGAAGTGCAAAAAATTGTCACCACTAAGGTTGTAAAATCTGGCTTCATGACTACTGTACCTAAAGTGATTCGAATTTCAGTGACTGATCACTATGCTACAGATTCTTCCAGTGATGATGAGGAAGAGAGGCTTGATCAATGCCACAACAGGGCAAAGAAAGTGGTGAATGAGATCAGAATCCAGGGTGCTTCAATTCCCACAATTGGTAACAAGAACAACAAGAGACATGAAAACAATGGTGAGGGATGTTCTTCTCAAAATCAATGTCAGGGGCCTAAACAAGATAAAAATGTTCCCAACAAGCACAAATTTCGTGGGGTTCGCCAAAGGCCTTGGGGGAGATGGGCTGCTGAGATTAGAGATCCTGTGAAGAGGAATAGAGTGTGGCTTGGAACTTATGACACTGCAGAAGAGGCTGCCATGGCTTATGACACTGCTGCTATTCACTACAGAGGTGCTGATGCTGTTACCAATATCATCAAACCACCTGAGAAACATAAACCTTTGCCAGAACATGAAGGGTATGATGAACAAAAGCCTTTGTCCAATCATGAAGGATGTGATGAAGGTGTATCAGTTGATTGTGATGTAGATAGTTGTGGTTTATCATCTTCACCAACTTCTGTTTTTGTATTTGATCCTTTTGAACTTTGGAATGAAAGGATACATGTGGAAGAATGGTTTAGAGAGTTCAGTCAAGAGTCTTTGGATGATGGCTTTTTGTTTTTGGATTCACTTGATTCTTGTCCCCATTATGAACCACTGCTTCCAGTAGTTTCTAATGACAATGGCATTGATACGCCTTTCCATCTTGAGGAGGATTTTGAATCATGTAAATGGGATGTAGATAATTACTTCAATGACCCTTTGTTAATGTAA 912 0.4079 MLKLQLTVTEEEVQKIVTTKVVKSGFMTTVPKVIRISVTDHYATDSSSDDEEERLDQCHNRAKKVVNEIRIQGASIPTIGNKNNKRHENNGEGCSSQNQCQGPKQDKNVPNKHKFRGVRQRPWGRWAAEIRDPVKRNRVWLGTYDTAEEAAMAYDTAAIHYRGADAVTNIIKPPEKHKPLPEHEGYDEQKPLSNHEGCDEGVSVDCDVDSCGLSSSPTSVFVFDPFELWNERIHVEEWFREFSQESLDDGFLFLDSLDSCPHYEPLLPVVSNDNGIDTPFHLEEDFESCKWDVDNYFNDPLLM* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00347 303 SUPERFAMILY DNA-binding domain 114 170 IPR016177 GO:0003677
Rops4g00347 303 MobiDBLite consensus disorder prediction 75 106 - -
Rops4g00347 303 PRINTS Ethylene responsive element binding protein signature 137 153 IPR001471 GO:0003700|GO:0006355
Rops4g00347 303 PRINTS Ethylene responsive element binding protein signature 115 126 IPR001471 GO:0003700|GO:0006355
Rops4g00347 303 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 31 184 - -
Rops4g00347 303 FunFam Ethylene-responsive transcription factor 2 113 172 - -
Rops4g00347 303 Pfam AP2 domain 114 163 IPR001471 GO:0003700|GO:0006355
Rops4g00347 303 Gene3D AP2/ERF domain 113 171 IPR036955 GO:0003700|GO:0006355
Rops4g00347 303 ProSiteProfiles AP2/ERF domain profile. 114 171 IPR001471 GO:0003700|GO:0006355
Rops4g00347 303 SMART rav1_2 114 177 IPR001471 GO:0003700|GO:0006355
Rops4g00347 303 MobiDBLite consensus disorder prediction 173 194 - -
Rops4g00347 303 MobiDBLite consensus disorder prediction 75 118 - -
Rops4g00347 303 CDD AP2 114 169 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00347 Rops-Chr4 10411446 10412357 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00347 32 301 AP2-EREBP Transcription Factor Family AT4G27950 37.091 4.16e-41 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops4g00347 AP2 7.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00347 - - tpra:123886940 210.69