Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00346 ATGGACGAGGATCAAGAGATGGAGGGATTCGGAATGGAGAACGATTTCGAAGGTGCACAATGGATTGGTGGCGAGTTTTACTATCGAAAGCGCAAGGAGAAACGAACTCAAACCAAAGACGATGTTCTCTATGGCGTTTTCGCCGATTCCGATGACGACGACGATGATTATTCGAGCCGAAAACGCCGTAAAGATCGCGACTTATCGAAGAAACCCGACCTCACAAAACCGGTTAATTTTGTATCTACTGGAACCTTTATGCCTAATGAGAATATTGATAATAAAAATTTGAAAGAACAAGAAGAGAAGGATAGTTATGAGGATGTTAATGGAGATAGGCCTGGTTTAGGTGTTGGTTTAGGGTTTGCTAGTACATCAGGGTCTGGTTTAGGCTTTAATTCGGTTGCGAATGGTGATGATAGAAATGATGAGAATGAGGAGGATAACTTTCTTCCTACGTCATTTGGGAAGATGATTAAGGAGGGGGCGATGAGGAGGGAAAGGGAGAGGGAGAAGGAGAGATTGGAGAAGAAGAGAGGGCAGCAGCGTCAGGGGTTAGGTCAAGATGGAGTTTCCAATGATGTTGGGAAATTTGAGAAGCATACGAAGGGGATAGGGATGAGGTTGTTGGAGAAGATGGGCTATAAAGGAGGTGGTCTTGGGAAGAATGAGCAGGGTATTGTTGCTCCTATTGAGGCGAAATTGAGGGCTAAGAATTCGGGTATTGGATTTAATGAATCTAATAAGGAGAGTACTATGCGGTTGCCTGTTTTGCAGCAAGAGAAGAAGAGTGATCCGGTAAGTGCAAAACCTGCGGTTGGAAGAACGAAAGAAAGGTTATGGTCGAAGCAAGCGAGGTTGAAGAAGAAGAAAGAGGAGGAAAAGTATATAACTGCTGAGGAGTTGTTGGCGAGCAAGCAAGAAGAAGAATTGGACGTTGTTCAGAAGGTTTATGATATGAGGGGACCACAGGTTCGAGTACTTACCAATTTGTCTGATTTGAATGCTGAGGAGAAAGCAAAGGAGAATGATGTCCCAATGCCAGAACTTCAGCATAATATAGCGTTGATAGTTCGGATGGCCGAGGCTGACATCCAAGAGATTGATAGAGATTTGAGGAGAGAGAGGGAGACAGCACTTAGCTTGAAAAAGGAAAAAGAGAAGTTGGAAACTGAGGCAGCATTGCAAAAGAAGCAGCTGGATAATTTGGAGGAAATAATGAGGGTGTTGGACCGAGTCGGAGAAGAGAACACTTTAGGAACGTTAACATTGGATTCCCTTGCTCAACTCTTTAGGGACTTGCACAAAAGATATGCTGATAATTACAAGTTGTGTAACTTGTCATGCATTGCTTGCTCATATGCACTGCCTTTGTTTATCAGAGTGTTCCATGGATGGGATCCTCTTCGAAATCCGTCTCATGGGTTGGAGTTGGTATCACAGTGGAAGACATTGCTTCAAGGAGAAGATTATCTTGATATATGGGATGTATCTTCACCTTATACTCAATTGGTTTCAGAGGTTGTATTGCCAGCTGTTAGAATATCTGGCATTAATACCTGGCAGGCACGGGATCCTGAGCCGATGCTACGGTTTCTGGAGTCATGGGAAAAGTTGCTTCCTTCTTCAGTTCTTGCCACTATAATGGACATTATAGTCATGCCAAAACTATCAAGTGCTGTAGATACTTGGGAACCACATCGTGAGACCATTCCTATCCACACATGGGTGCATCCTTGGCTACCTCTGCTAGGGCACAAGTTGGAGGGTATCTACCAGGTGATTCGTTTCAAATTGAGTACTGTTCTTGGTGCGTGGCACCCAAGTGATGGTTCTGCTTATGCTATATTGTCTCCTTGGAAGACTGTATTTGATTCTGTAAGTTGGGAACAACTTATGCTTCGTTTTATTGTACCAAAGTTGCAGCTTGTCTTGCAAGAGTTCCAAGTGAACCCAGCAAGTCAGAATCTTGATCAATTTTATTGGGTGATGAACTGGGCTTCTGCTATTCCAATTCATTTGATGGTGGATATGATGGAGAAATTCTTCTTTGCCAAATGGCTTCAGGTTTTGTATCATTGGTTGTGCTCAAATCCTAACTTTGAAGAAGTTACAAAATGGTATTTGGGCTGGAAAGAACTTATTCCAAAGGAACTTTTGGCAAATGAAAGTATTCGATACCAACTTAATCGTGGTCTTGATATGATGAACCAGGCTGTTGAAGGTATGGAAGTGGTCCAACCTGGTTTGAAGGAGAATATAAGCTATCTTAGGGTACTTGAGCAAAGGCAATTTGAGGCTCATCAGAAAGCAGCAGCCTATGCTCAACAGCAAGCTGCTGCAAGCTTGGGTGGTGCTGCCAATGCAGATGGTGTGGCTGGTGGGCATGAATTAAGCTTGAAAGAAGTCATTGAGGCCCATGCTCAGCAACATGGTTTACTATTCAAGCTTAAACCTGGTAGAATGCACAACGGTCATCAAATATATGGGTTTGGTAATGTCAGTATTATTATAGACTCTCTAAATCAAAAGGTATATGCCCAAAATGAGGAACAATGGTCTTTAGAATCTCTTCAAGGATTGCTAGAGTTGCATAATAAATCCCTGAGTAAAAGACGCTGA 2622 0.4283 MDEDQEMEGFGMENDFEGAQWIGGEFYYRKRKEKRTQTKDDVLYGVFADSDDDDDDYSSRKRRKDRDLSKKPDLTKPVNFVSTGTFMPNENIDNKNLKEQEEKDSYEDVNGDRPGLGVGLGFASTSGSGLGFNSVANGDDRNDENEEDNFLPTSFGKMIKEGAMRREREREKERLEKKRGQQRQGLGQDGVSNDVGKFEKHTKGIGMRLLEKMGYKGGGLGKNEQGIVAPIEAKLRAKNSGIGFNESNKESTMRLPVLQQEKKSDPVSAKPAVGRTKERLWSKQARLKKKKEEEKYITAEELLASKQEEELDVVQKVYDMRGPQVRVLTNLSDLNAEEKAKENDVPMPELQHNIALIVRMAEADIQEIDRDLRRERETALSLKKEKEKLETEAALQKKQLDNLEEIMRVLDRVGEENTLGTLTLDSLAQLFRDLHKRYADNYKLCNLSCIACSYALPLFIRVFHGWDPLRNPSHGLELVSQWKTLLQGEDYLDIWDVSSPYTQLVSEVVLPAVRISGINTWQARDPEPMLRFLESWEKLLPSSVLATIMDIIVMPKLSSAVDTWEPHRETIPIHTWVHPWLPLLGHKLEGIYQVIRFKLSTVLGAWHPSDGSAYAILSPWKTVFDSVSWEQLMLRFIVPKLQLVLQEFQVNPASQNLDQFYWVMNWASAIPIHLMVDMMEKFFFAKWLQVLYHWLCSNPNFEEVTKWYLGWKELIPKELLANESIRYQLNRGLDMMNQAVEGMEVVQPGLKENISYLRVLEQRQFEAHQKAAAYAQQQAAASLGGAANADGVAGGHELSLKEVIEAHAQQHGLLFKLKPGRMHNGHQIYGFGNVSIIIDSLNQKVYAQNEEQWSLESLQGLLELHNKSLSKRR* 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00346 873 Coils Coil 89 109 - -
Rops4g00346 873 Pfam Tuftelin interacting protein N terminal 4 104 IPR022159 -
Rops4g00346 873 MobiDBLite consensus disorder prediction 94 110 - -
Rops4g00346 873 SMART G-patch_5 200 245 IPR000467 GO:0003676
Rops4g00346 873 MobiDBLite consensus disorder prediction 54 73 - -
Rops4g00346 873 MobiDBLite consensus disorder prediction 160 183 - -
Rops4g00346 873 Coils Coil 358 406 - -
Rops4g00346 873 ProSiteProfiles G-patch domain profile. 202 247 IPR000467 GO:0003676
Rops4g00346 873 MobiDBLite consensus disorder prediction 76 93 - -
Rops4g00346 873 Pfam G-patch domain 202 243 IPR000467 GO:0003676
Rops4g00346 873 Pfam GC-rich sequence DNA-binding factor-like protein 424 691 IPR022783 -
Rops4g00346 873 Coils Coil 289 309 - -
Rops4g00346 873 PIRSF TFIP11 1 868 IPR024933 -
Rops4g00346 873 MobiDBLite consensus disorder prediction 39 200 - -
Rops4g00346 873 PANTHER TUFTELIN-INTERACTING PROTEIN 11-RELATED 1 860 IPR045211 GO:0000390
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00346 202 248 C2H2 Transcription Factor Family AT5G26610 48.936 7.16e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00346 K13103 - gmx:100781621 1424.45