Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00342 ATGCTACCTTCCCCTTATGTGGGGGGTTCAATTCCTGATGCTTGTATAAAAGGTTTCCATCTCGGTCCACGTGCGTCACAGTCTAAGCCTCCATCTCGATCCACGTGCGTCACAGTCCAAGCCGGTCCAGACTCCGAGTTTCTAAGACTCCGAAACCCTTCTTCTTCCACAGCATCAAACACAACTTGTGCGTGTGTTGTTCCATACACAAACCCTACAATCATTTCTCTTTCACCACCACCAGCCAATGCTACCACCACCATAACCTCTCCAACAGTAACAACCAACCCTAGAAACCCATCACAAGACAACAATAATAATGTTCATTATTCTTTTCCCAACATGAACCTTTTCTCAACCTCCACCTCTTCTTCCACTGCTTCAGATGAAGACTTGGAAGAGAAATACAGAAAGAAGAAAAAATGGAAGGACTACTTCAGGAGGCTCATAAGGCATGTCTTAGCCATGCAAGAGGAAATGCAGAAGTTATTGGAAGCCATAGACAAACGACAAAAAGCTAAGTATCAAGAAAATGGACAAAAAGCTCCATTGTGGGAAGATATATCAGCAGGTATGCAGAGGCTTGGATACAACAGGAATGCCAAAAGGTGCAAAGAGAAATGGGAGAACATCAACAAGTACTTCAAGAAAGTCAAGGAAAGTAACAAGCAAAGGCGTGAAGATAGCAAGACATGTCCCTATTTTCATGAGCTTAATGCTCTATGTAAAGAAAAGAGCAAAACACAAAACCCCTTTGGTGCTTGA 765 0.4301 MLPSPYVGGSIPDACIKGFHLGPRASQSKPPSRSTCVTVQAGPDSEFLRLRNPSSSTASNTTCACVVPYTNPTIISLSPPPANATTTITSPTVTTNPRNPSQDNNNNVHYSFPNMNLFSTSTSSSTASDEDLEEKYRKKKKWKDYFRRLIRHVLAMQEEMQKLLEAIDKRQKAKYQENGQKAPLWEDISAGMQRLGYNRNAKRCKEKWENINKYFKKVKESNKQRREDSKTCPYFHELNALCKEKSKTQNPFGA* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00342 254 Gene3D - 156 217 - -
Rops4g00342 254 Coils Coil 153 173 - -
Rops4g00342 254 ProSiteProfiles Myb-like domain profile. 157 212 IPR001005 -
Rops4g00342 254 CDD GT1 157 219 - -
Rops4g00342 254 Pfam Myb/SANT-like DNA-binding domain 157 241 IPR044822 -
Rops4g00342 254 MobiDBLite consensus disorder prediction 91 114 - -
Rops4g00342 254 PANTHER FI21293P1 99 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00342 Rops-Chr4 10159040 10162707 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00342 173 247 Trihelix Transcription Factor Family AT1G76880 80.000 1.94e-37 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Rops4g00342 Myb_DNA-bind_4 9.9e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00342 - - gsj:114370603 160.999