Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00316 ATGGTGGCTGCTTGTCTTCAACAAGTTCTAGGGATGGGGAAAAAGAGACAGTTAGGAAAAGGCATGCCTAGTGGTTCTGCTTTTCTACAAAGCCTTCTTTATGGAAAGAAAATCTTGGTGGTTGACGACAATGGGGTAAACCGGAGGGTTGCTGCAGGTGCATTGAAAAAGTTTGGAGCTGATGTGAAGTGTGCTGAAAGTGGCAAAACTGCACTTGAAATGCTTCAATTGCCTCACAATTTTGATGCTTGCTTCATGGACATTCAAATGCCCGAAATGGATGGATTTGAAGCAACAAGTCGAATTCGGATGATGGAGAGAAAAGCAAAGTTGCACCAATGA 342 0.4327 MVAACLQQVLGMGKKRQLGKGMPSGSAFLQSLLYGKKILVVDDNGVNRRVAAGALKKFGADVKCAESGKTALEMLQLPHNFDACFMDIQMPEMDGFEATSRIRMMERKAKLHQ* 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00316 113 ProSiteProfiles Response regulatory domain profile. 37 113 IPR001789 GO:0000160
Rops4g00316 113 Gene3D - 26 112 - -
Rops4g00316 113 PANTHER TWO-COMPONENT HISTIDINE KINASE 23 108 - -
Rops4g00316 113 SUPERFAMILY CheY-like 35 106 IPR011006 -
Rops4g00316 113 SMART REC_2 36 111 IPR001789 GO:0000160
Rops4g00316 113 CDD REC_hyHK_CKI1_RcsC-like 38 110 - -
Rops4g00316 113 Pfam Response regulator receiver domain 38 106 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00316 Rops-Chr4 9552809 9553150 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00316 1 110 Histidine Kinase Gene Family AT2G01830 71.429 8.42e-47 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Rops4g00316 Response_reg 2e-15 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00316 K14489 - gmx:100776599 200.29