Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00311 ATGTCCAAGGTATGGAGCAGTGTCTGTTCTGTCTTACTTCACATTTACCTTTGCATTGTGCTGACACAATCTGCACCTGAAAGTGCCATTGTAACTCAACTTCCAGGCTTCAATGGCACTCTACCTTCCAAGCACTATGCTGGGTATGTGACAGTGGATAAAAGTCATGGAAGGAACTTGTATTACTATTTTGTTGAATCTGAAGGTAAACCTTCTGAGGATCCAGTGGTTCTGTGGCTTAATGGGGGACCTGGGTGCTCTAGCTTCGATGGCTTTATATATGAGCATGGTCCTTTTAATTTTGAAGCCCTGAAGACAAAGGGAAGCTTACCAACATTGCACCTCAATCCATACAGTTGGTCAAAGGTTTCCAGTATTATATATTTGGATTCTCCTGCTGGTGTGGGGTTTTCATACTCTGAGAATGAAACTGATTATATAACTGGAGACAAAAAGACTGCCTCTGATACACATGCATTTCTCCTTAAGTGGTTTGAATTGTACCCTGAGTTCCTTTCCAACCCATTCTTCATTGCTGGAGAGTCATATGCAGGGGTTTATGTGCCTACTCTTGCCTTTGAAGTAATGAAAGGAATTGATGCTGATGTGAAGCCCAAACTGAATTTCAAGGGTTACATGGTTGGAAATGGTGTTACAGATGATCAATTTGATGGCAATGCTCTTGTTCCATTTGTTCACGGGATGGGTCTTATCTCAGATGAACTGTATGAGGAGGTAAACGTTGAGTGTAAGGGGAATTTCTATAATCCACTCAGTGATAACTGTTCTAGCAAGCTTGCAAAAGTTGATAAGAACATTGATGAGTTGAACATATATAACATTCTAGAACCATGCTATCATGGCACAGAGGCAGAGAAGATTACAGAATCCTATATTAGGTTGCCATCTAGCTTCAGGAAGTTGGGTGAGACTGAGAGACCTCTTCCTGTGAGGAAAAGACTGTTTGGTCGTGCTTGGCCCCTAAGAGCACCAGTGAGAGATGGAATTGTACCAACTTGGCCTCAACTGATCAATAGCAACAATGTTCCATGCACTGATGGCACGGTTGCGGACTTATGGTTGAACAATGAAGCAGTCAGGAAAGCAATTCACACTGCACAGAAAAGTGTGATCAGTAGTTGGGATTTATGCACAGACAAAATTTTCTTCAGTCATGATGCTGGAAGCATGATCAATTACCACAAGAACCTAACTTCCAGAGGATATCGAGCACTTATATTCAGTGGTGATCATGACTTGTGTGTTCCATTTACGGGGAGTGAAGCATGGACGAGATCAATTGGATACAAGGTTGTTGATGAATGGAGGCCTTGGACATCCAATGGTCAAGTTGCTGGGTATACTCAAGGATATGACAAAAATCTTACTTTTCTGACCATAAAGGGAGCTGGGCATACTGTTCCAGAATATAAACCACAAGAGGCATTGGATTTTTATAAACGCTTTCTTGCTGGATTGCCAATATGA 1488 0.418 MSKVWSSVCSVLLHIYLCIVLTQSAPESAIVTQLPGFNGTLPSKHYAGYVTVDKSHGRNLYYYFVESEGKPSEDPVVLWLNGGPGCSSFDGFIYEHGPFNFEALKTKGSLPTLHLNPYSWSKVSSIIYLDSPAGVGFSYSENETDYITGDKKTASDTHAFLLKWFELYPEFLSNPFFIAGESYAGVYVPTLAFEVMKGIDADVKPKLNFKGYMVGNGVTDDQFDGNALVPFVHGMGLISDELYEEVNVECKGNFYNPLSDNCSSKLAKVDKNIDELNIYNILEPCYHGTEAEKITESYIRLPSSFRKLGETERPLPVRKRLFGRAWPLRAPVRDGIVPTWPQLINSNNVPCTDGTVADLWLNNEAVRKAIHTAQKSVISSWDLCTDKIFFSHDAGSMINYHKNLTSRGYRALIFSGDHDLCVPFTGSEAWTRSIGYKVVDEWRPWTSNGQVAGYTQGYDKNLTFLTIKGAGHTVPEYKPQEALDFYKRFLAGLPI* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00311 495 Gene3D - 347 494 - -
Rops4g00311 495 Gene3D alpha/beta hydrolase 23 315 IPR029058 -
Rops4g00311 495 Pfam Serine carboxypeptidase 35 491 IPR001563 GO:0004185|GO:0006508
Rops4g00311 495 ProSitePatterns Serine carboxypeptidases, histidine active site. 462 479 IPR033124 GO:0004185
Rops4g00311 495 FunFam Carboxypeptidase 24 308 - -
Rops4g00311 495 ProSitePatterns Serine carboxypeptidases, serine active site. 178 185 IPR018202 GO:0004185
Rops4g00311 495 SUPERFAMILY alpha/beta-Hydrolases 31 494 IPR029058 -
Rops4g00311 495 PRINTS Carboxypeptidase C serine protease (S10) family signature 462 475 IPR001563 GO:0004185|GO:0006508
Rops4g00311 495 PRINTS Carboxypeptidase C serine protease (S10) family signature 129 139 IPR001563 GO:0004185|GO:0006508
Rops4g00311 495 PRINTS Carboxypeptidase C serine protease (S10) family signature 164 189 IPR001563 GO:0004185|GO:0006508
Rops4g00311 495 PRINTS Carboxypeptidase C serine protease (S10) family signature 116 128 IPR001563 GO:0004185|GO:0006508
Rops4g00311 495 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 31 479 IPR001563 GO:0004185|GO:0006508
Rops4g00311 495 FunFam Carboxypeptidase 350 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00311 Rops-Chr4 9455386 9461282 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00311 356 495 Calmodulin-binding Proteins AT2G22960 46.429 2.09e-40 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00311 K16296 - gmx:100792057 909.827