Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00309 ATGGATCCATTTTCTCAACTATTGATTAATGGAAATACCAACAACATGTCAAACAAGTGGACTCACTCCGAAGACCGAGCCTTTGAGCGAGCACTCCTAATCTACCTAGAAGGCATAACAAACAGATGGGAGAAAGTCGCCACTTTGGTTCCTAGTCGCTCTCCAAAAGAGGTCGGGGAACACTATATAGCATTGCTTAATGATATATCCTTGATTGAGTCAGGTCATATCAAGTTGCCAAATTATTCAGATGACTTGATTCTAGAGACAATTATAGAAGAAGGTGATTCATCAAAGTAG 300 0.4 MDPFSQLLINGNTNNMSNKWTHSEDRAFERALLIYLEGITNRWEKVATLVPSRSPKEVGEHYIALLNDISLIESGHIKLPNYSDDLILETIIEEGDSSK* 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00309 99 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 14 84 IPR044636 GO:0003700
Rops4g00309 99 ProSiteProfiles Myb-like domain profile. 12 66 IPR001005 -
Rops4g00309 99 CDD SANT 19 66 IPR001005 -
Rops4g00309 99 SUPERFAMILY Homeodomain-like 18 74 IPR009057 -
Rops4g00309 99 Pfam Myb-like DNA-binding domain 18 63 IPR001005 -
Rops4g00309 99 SMART sant 16 68 IPR001005 -
Rops4g00309 99 Gene3D - 12 79 - -
Rops4g00309 99 FunFam Transcription factor SRM1 12 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00309 Rops-Chr4 9429247 9429546 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Rops4g00309 Myb_DNA-binding 4.2e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00309 - - csin:114288874 85.1149