Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00307 ATGACTCAGACTGCAGCGGTGGTAGGTCACCAGGTTGGTCCACCTGCAGCCCCTCCTCTCCGTTGGAAATATGTCTTGAAGATCTCCTTGTGGTTACTATCCTGGGAAATTCCGAAAGGGATTGGTGATCTTACTCAACTGATTTTAATGGAGCTGCAATATAATCAGCTTTCGGGCAACATATCGTCGACAATATTCAACAACTCATTGTTGCAAGATATTGCTCTTGGTTATAATAATCTGTCTGGCAGTCTTCCGTCAAATATTTGTCAGGGGCTTCCAAAACTTCGATTACTTTATCTTTTCGATAATGATCTTTCTGGTGAGATGCCAACTGTTTGGCATCAATGTAAGGAGTTGGAAGATTTAGAACTATCTTTCAATAATTTCGACAAAGGACGTATGCCAAGTGACATGGGAAACTTGACCAAGCTTCAATATTTATATCTTGCTAGCAACAACCTTGAGGGTTCGATACCCTTGGAGATTGGCCATCTTAATCAACTAGAGTTCGTACAATTGGGAAATAACAGCTTAAGTGGACCTATTCCTTCAAAACTCTTCAACATTTCAACATTGATATACTTGTATCTTGCAGGAAATTCTCTCTCAGGCACTCTTCCATCAGATATGGGATATGGCCTTCCTAACCTGGAAGAACTACACCTGTATAATAACAAACTTGTTGGAAACATTCCTAAGGGTATATCCAATGCTTCCGAGCTCACTACTATTGACCTAAGTGAGAATGAGTTCAGCGGAATTATACCTAATGCTTTTGGAGCTTTAAGTGTCCTCAAAAAGCTCAATATAGCTGACAATAATTTGACTACAGATGATTCTCTTGAATTCAGCTTCCTTACTTCATTGACAAATTGTAGACATTTGATATATCTGGAAGTATCAAGGAATAGATTGTTATCAAAACTTCCCAAATCAGTTGGAAACTTATCAATGTCTTTAGAAAATATTTGGGTAGATTCTTGCGGAATTGAGGGCAATATTCCACTTGAAATTGGAAACATAAGCAACTTGATACTTTTATCATTAAATGGGAATGATATGAATGGACCAATGCCAGGTACAATAAGAGGGTTACAAAAACTTCAGTATTTGAGTCTTGACTACAATGGACTGCAAGGATCCATCATTGATGAGCTTTGTGAAATAAGGAGTTTGAGTGAGTTGTATCTGACAAACAATAAGCTTTCTGGAGTGTTACCAACATGCCTAGGAAATATGAGTTCTCTGAGAAAGGTATACATAGGATCTAACAGATTGATCTCTGGGATACCTTCCTCTTTTTGGAGTCTCAAAGATATCTTAGAGGTTAACTTATCGTCCAATGCTTTAATCAGAAATCTTCCACTTGACCTTACGAAATTGAGAGCTCTTGTACTACTGGATCTATCAAGAAATAAGATTTCAGGAAATATTCCTACTACCATAAGTTTCTTGAAAAATATGCAAACTCTCTCTTTAGCACATAAAAAATTGCAAGGGTCTATTCCAGAATCACTTGGTGAAATGGTAAGCTTGATCTTTTTGGACTTATCCCAAAATCTTTTGTCTGGTGTGATTCCAAAATCCTTGGAGTCACTTGTCTATCTTAAATACATTAACTTTTCATACAATAAATTACAAGGAGAGATTCCCATTGGTGGACCTTTCAAAACTTTCACAGCTCAATCTTTTATGCATAATGAAGATCTTTGCGGCAATCCTCTCCTTAAAGTACCTCCATGTGCTAAACAAGTTAGGCGAAGGACAATGGCAAAGAAGCTTTTAATCAAATGCATATTGCCATTAACTATATCAATCATTGTTGTTGTTGTTGCATGCATATTACTTTTACAACGTAAAAGGAAAAAGGTTGAAAATCCACTTGAAAGGGATTTGTCAACTTTAGGAGTTCCAAGAAGAATTTCCTATTATGAAATCATACAAGCAACAAATGGATTCAGCAAAAGTAATTTACTTGGAAAGGGGAGCTTTGGTTCCGTGTATAGAGGGATGCTCTCTAATGGGATGATGGTTGTTATTAAAGTAATTGATTTAGACTTGGAAACAACATCAAGGAGCTTTGATGCAGAATGCAATGCGTTGAACATAATGATAGATGTGGCATCTGCATTGGAATATATGCATCATGGTTCTTCAATACCAGTGGTTCATTGTGATCTGAAGCCTAGTAATGTTTTATTGGACGAAAACATGGTTGCACATGTTAGTGACTTTGGCATTGCTAAGCTCTTAGATGAAGGACAATCTAAAACTCATACCGAGACCTTGGCTACTGTTGGCTATGTTGCACCAGAGTATGGATCCAAGGGAATTATTTCTGTTAAAGGAGATGTGTACAGTTATGGGATTATGTTAATGGAAATGTTCACAAGAAAGAAGCCAACAGATGATATGTTTGCAGCAGAGTTAAGCTTGAAAACTTGGATCAAGGAGTCATTACCCAATTCAATCATGGATGTTGTAGATTTCAATTTAGTACAACCACACCGGGAACAAATTAATGACATATTGGCTCATATATCATCTATTTTGGAATTAGCCTTAAGATGTTGTGTAGATTCTCCTAAAGCACGAATTACTATGACAGATGTCACTGGGGCATTAACAAAAATCAAGACCCTCCTCACCCAATGA 2658 0.3713 MTQTAAVVGHQVGPPAAPPLRWKYVLKISLWLLSWEIPKGIGDLTQLILMELQYNQLSGNISSTIFNNSLLQDIALGYNNLSGSLPSNICQGLPKLRLLYLFDNDLSGEMPTVWHQCKELEDLELSFNNFDKGRMPSDMGNLTKLQYLYLASNNLEGSIPLEIGHLNQLEFVQLGNNSLSGPIPSKLFNISTLIYLYLAGNSLSGTLPSDMGYGLPNLEELHLYNNKLVGNIPKGISNASELTTIDLSENEFSGIIPNAFGALSVLKKLNIADNNLTTDDSLEFSFLTSLTNCRHLIYLEVSRNRLLSKLPKSVGNLSMSLENIWVDSCGIEGNIPLEIGNISNLILLSLNGNDMNGPMPGTIRGLQKLQYLSLDYNGLQGSIIDELCEIRSLSELYLTNNKLSGVLPTCLGNMSSLRKVYIGSNRLISGIPSSFWSLKDILEVNLSSNALIRNLPLDLTKLRALVLLDLSRNKISGNIPTTISFLKNMQTLSLAHKKLQGSIPESLGEMVSLIFLDLSQNLLSGVIPKSLESLVYLKYINFSYNKLQGEIPIGGPFKTFTAQSFMHNEDLCGNPLLKVPPCAKQVRRRTMAKKLLIKCILPLTISIIVVVVACILLLQRKRKKVENPLERDLSTLGVPRRISYYEIIQATNGFSKSNLLGKGSFGSVYRGMLSNGMMVVIKVIDLDLETTSRSFDAECNALNIMIDVASALEYMHHGSSIPVVHCDLKPSNVLLDENMVAHVSDFGIAKLLDEGQSKTHTETLATVGYVAPEYGSKGIISVKGDVYSYGIMLMEMFTRKKPTDDMFAAELSLKTWIKESLPNSIMDVVDFNLVQPHREQINDILAHISSILELALRCCVDSPKARITMTDVTGALTKIKTLLTQ* 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00307 885 Gene3D Phosphorylase Kinase; domain 1 617 701 - -
Rops4g00307 885 SUPERFAMILY L domain-like 320 577 - -
Rops4g00307 885 SUPERFAMILY RNI-like 25 283 - -
Rops4g00307 885 Pfam Protein kinase domain 697 872 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g00307 885 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 684 885 - -
Rops4g00307 885 SMART LRR_typ_2 390 413 IPR003591 -
Rops4g00307 885 SMART LRR_typ_2 462 486 IPR003591 -
Rops4g00307 885 SMART LRR_typ_2 44 68 IPR003591 -
Rops4g00307 885 SMART LRR_typ_2 142 166 IPR003591 -
Rops4g00307 885 SMART LRR_typ_2 414 438 IPR003591 -
Rops4g00307 885 SMART LRR_typ_2 93 116 IPR003591 -
Rops4g00307 885 SMART LRR_typ_2 510 533 IPR003591 -
Rops4g00307 885 SMART LRR_typ_2 215 239 IPR003591 -
Rops4g00307 885 SMART LRR_typ_2 240 262 IPR003591 -
Rops4g00307 885 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 292 586 - -
Rops4g00307 885 Gene3D Ribonuclease Inhibitor 23 280 IPR032675 -
Rops4g00307 885 Gene3D Ribonuclease Inhibitor 281 590 IPR032675 -
Rops4g00307 885 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 282 702 - -
Rops4g00307 885 SMART serkin_6 654 883 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g00307 885 Pfam Leucine rich repeat 391 451 IPR001611 GO:0005515
Rops4g00307 885 Pfam Leucine rich repeat 241 291 IPR001611 GO:0005515
Rops4g00307 885 FunFam Leucine-rich repeat receptor-like protein kinase TDR 22 291 - -
Rops4g00307 885 Gene3D Transferase(Phosphotransferase) domain 1 702 885 - -
Rops4g00307 885 SUPERFAMILY Protein kinase-like (PK-like) 634 876 IPR011009 -
Rops4g00307 885 ProSiteProfiles Protein kinase domain profile. 542 883 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g00307 885 ProSitePatterns Serine/Threonine protein kinases active-site signature. 723 735 IPR008271 GO:0004672|GO:0006468
Rops4g00307 885 ProSitePatterns Protein kinases ATP-binding region signature. 660 682 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00307 Rops-Chr4 9288365 9307637 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00307 37 880 Receptor kinase-like Gene Family AT3G47570 35.892 1.66e-160 494
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Rops4g00307 Pkinase 1.3e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00307 - K13420 mtr:25481440 1033.48