Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00303 ATGTTCCTCCTCCTCCTCCATAAGCTCATCCGTCCAGTAGGCCGGCGGTGGTTCCCCTACAAAAGGGACTCCAATGCTCAAGTGCTTCGAAATCAGAAGGGAGGTGCAGTATCGTGGTACATCGAAGTTTTTGGGGCTGGTGCAGTTAAAAAGGAAATTGATGATACTAATTTGTACATTGGGTATTTGCCACCCACTCTTGATGATGATGGCCTGATCCAATTGTTTCAACAATTTGGTGAGATTGTTATGGCAAAAGTTATCAAGGATCGAATGACAGGTTTAAGTAAAGGATACGGATTTGTGAAGTATGCTGATATCACAATGGCAAACAATGCAATCTTGGCCATGAATGGTTATCGTCTTGAGGGTCGAACCATTGCAGTCGGAGTTGCGGGACCTCCTGTTCCTCCTCCATATGCTCCTTATGCTCCTCCTCCACCCGGTTCAACCATGTATCCTCCCATGCAAAGTCAACCCATGCCTCCTTATGGTGTTCACTATCCTCCGATGTGCCCCCACAGTGCCCCGTCCCACCTGCAACTTCTATCAAGCGCAATGCAGTTACCCTCCGGAGTGCAATCTGATAATACCTCTACCCAGTCTGTACCAGCCAATATATATGGGAACGCAGTACCTTCAATGCCACCAGCTGCTCCACCCACGTATCCTGCATCTTATGGATATCCACCTTACTACAATGCTGTTCCTCCACCACCTCCCCCTCAGAACCCACCTTGA 741 0.4831 MFLLLLHKLIRPVGRRWFPYKRDSNAQVLRNQKGGAVSWYIEVFGAGAVKKEIDDTNLYIGYLPPTLDDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNAILAMNGYRLEGRTIAVGVAGPPVPPPYAPYAPPPPGSTMYPPMQSQPMPPYGVHYPPMCPHSAPSHLQLLSSAMQLPSGVQSDNTSTQSVPANIYGNAVPSMPPAAPPTYPASYGYPPYYNAVPPPPPPQNPP* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00303 246 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 58 127 IPR000504 GO:0003723
Rops4g00303 246 FunFam splicing factor-like protein 1 37 139 - -
Rops4g00303 246 Gene3D - 22 138 IPR012677 -
Rops4g00303 246 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 56 134 IPR000504 GO:0003723
Rops4g00303 246 SMART rrm1_1 57 130 IPR000504 GO:0003723
Rops4g00303 246 PANTHER GEO13361P1-RELATED 54 220 - -
Rops4g00303 246 SUPERFAMILY RNA-binding domain, RBD 52 150 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00303 Rops-Chr4 9116053 9118069 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00303 56 132 Eukaryotic Initiation Factors Gene Family AT4G34110 36.364 1.57e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00303 K13095 - gmx:100800982 189.119