Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00300 ATGGATCAATTTTTTACGATATTGATTAATGGGAACAACAACAACATGTCAAATAAATGGACTCACTCCCAAGATCGAGCCTTTGAGCAAGCACTTCTTTTCTATCCAGAAGGCATAGAAAACAGATGGGAGAAAGCCGCCAATTTGGTTCTTGGTCGTTCTCCGACAGAGCTCAAGGAACACTATGAAACATTGCTTCATGATTTATCCTTGATTGAGTCAGGTCATGTCAAGTTGTCAAATTACTTAGACGACTCAGTTCTAGAGCCATTTATAGAAATTAGTGATTCATCAAAGAAGGTCTCTCCCCCTCGAAACAAGAAATGGACTGAAGAAGAACACAGATTATTTCTCATGGGACTTGAGAAATATGGGAGGGGAGTTTGGAGAAACATTTCAAGGTATTTTGTCATGTCACGAACACCAACTCAAGTTGCTAGCCATGCACAGAAATACTTTCTTCACCAAAATGTCACAACAAAAGAGAGGAAAAGAAAAAGCATCCATGACATAACCTTAAGGGATAGTGACTTGGTACCTTACCTTTCCTCCCTCCAAATGCTCCAATGCAGCAATTACAACAAATTTAACAAGTACAAGAAGTGA 606 0.3911 MDQFFTILINGNNNNMSNKWTHSQDRAFEQALLFYPEGIENRWEKAANLVLGRSPTELKEHYETLLHDLSLIESGHVKLSNYLDDSVLEPFIEISDSSKKVSPPRNKKWTEEEHRLFLMGLEKYGRGVWRNISRYFVMSRTPTQVASHAQKYFLHQNVTTKERKRKSIHDITLRDSDLVPYLSSLQMLQCSNYNKFNKYKK* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00300 201 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 13 179 IPR043363 -
Rops4g00300 201 Gene3D - 107 158 - -
Rops4g00300 201 CDD SANT 19 66 IPR001005 -
Rops4g00300 201 NCBIfam myb-like DNA-binding domain, SHAQKYF class 108 156 IPR006447 GO:0003677
Rops4g00300 201 Pfam Myb-like DNA-binding domain 107 153 IPR001005 -
Rops4g00300 201 SUPERFAMILY Homeodomain-like 18 73 IPR009057 -
Rops4g00300 201 SMART sant 105 155 IPR001005 -
Rops4g00300 201 SMART sant 16 68 IPR001005 -
Rops4g00300 201 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 108 157 IPR017930 -
Rops4g00300 201 FunFam Transcription factor SRM1 12 79 - -
Rops4g00300 201 ProSiteProfiles SANT domain profile. 104 157 IPR017884 -
Rops4g00300 201 Gene3D - 12 79 - -
Rops4g00300 201 ProSiteProfiles Myb-like domain profile. 12 66 IPR001005 -
Rops4g00300 201 CDD SANT 108 153 IPR001005 -
Rops4g00300 201 FunFam transcription factor MYB1R1 107 158 - -
Rops4g00300 201 ProSiteProfiles Myb-like domain profile. 105 153 IPR001005 -
Rops4g00300 201 SUPERFAMILY Homeodomain-like 107 157 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00300 Rops-Chr4 9053382 9054724 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Rops4g00300 Myb_DNA-binding 7.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00300 - - twl:120006132 178.718