Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00299 ATGGCTTCCTCTTTGCTTCCCTTTCTCCTCTGCTCACTGATTCTGCTACCCATCTGTGTTTTAGCCCAAACCAGAAGCAAAATAGCCATTGGTGATTCTCTTATAGCAAAAACCAACACCACCCCATGGTTGGTTTCACCTTCTGGTGACTTTGCCTTTGGTTTTCTCCAACCTAATGGCACTGAACTTTTCTTGCTTTCCATTTGGTATGCCAAGATTCCAGAAAAGACCATGGTTTGGTATGCCAATGGAGACAATCCTGCACCAAAGGACTCAAAAGTGGAGCTAAGTGCTAGTGATGGGCTAGTCCTAACTGCTCCAAATGGTGACCAGTTATGGAAAACTGAGGGCCTCACTGGTGGAGTTTCTCATGGTGTGTTCAATGACACCGGCAACTTTGTGCTTGAAGATGGTAGCTCCAACAGTGTCTGGGAGACTTTCAAGGATCCCAGGGACACCTTGTTGCCCTCTCAGGTTCTTGAAAAGGGTGAAAAGCTTTCTTCAAGACTTAGGGAGAATAATTTCAGCAAGGGAAGGTTTGAGCTCCTTTTTAAAAACGATGGTAATCTTGTGATGTATTCTATAAATTTGCCATCTGGGTATGTTAATGATGGAAACTATTATGAAAGTGGAACTGTGGAATCCAACACATCAAGTGCTGGAACAAAACTGGTCTTTGATAGATCAGGGGACTTGTATGTTTTGAGAGAGAAAAATGAAAAGTCCAATATTTCAGATGTGAGTAGTGTCTCTACTACTCAGTTTTATCTTAGAGCAACACTTGATTTTGATGGGGTGTTCACACTCTATCAGCATCCAAAGGGTTCAAATGGCAATGGAGGTTGGACCACAGTGTGGTCTCAACCAGATAATATATGCAGTTATCTTATTAGTACAGGTAGTGGCATTTGTGGATATAACAGCTACTGCACCTTGGGAGGTGATAAGAGGCCAAAATGCCAATGCCCAAAAAAGTACTCTCTTCTTGATCCTAATGATCCTTATGGTAGTTGCAAGCCAGATTTCATACAAGGATGTGCAGAAGATGAACTTAGTAACAGGAAAGATCTTTATGATTTTGAGGTTTTGATAGATACTGATTGGCCTGTTTCAGATTCTGTGCTTCAAAAGCCTTTTACAGAAGATCAATGTAGACAGTCTTGTATGGAAGATTGCCTGTGTTCTGTGGCTATTTTCAGGTTAGGTGACCACTGCTGGAAGAAAAAACTGCCACTTTCAAATGGGAAAGTTGATGCCACACTTAATGGTGCTAAGGCCTTCTTGAAAGTGAGGAAAGATAATTCCTCCTTTGTTGTTCCTCCAAATCCAATCATTGTGAACAAGAATAGGAACACTTTGATTTTGGTTGGTTCTGTGCTTTTGGGTAGCTCTGCTTTTCTCAATCTTGTATTGATTGGAGCAATATGCTTCAGCACTTCCTTCATTTTTCAGTACAAAAAGAAGCTTGGAAGAGTCAGCAGAAGTGACACTACTGTTGCAACCAATTTGCGTTGCTTCACTTATGAGGAACTTGAAGAAGCTACCAATGGATTTGACAAAGAGCTAGGAAGGGGAGCTTTTGGTATTGTTTACGAAGGAGTCATCAACATAGGTTCCACAACTCGTGTGGCTGTGAAAAAGTTGAACACTTTTCTCTTGGAAGAGGTTCACAAGGAATTCAAGAATGAATTGAATGTCATTGGTCTCACACATCACAAGAACTTGGTTCGTTTACTTGGATGTTGTGAGGCTGGATCTGAAAGGTTGCTAGTTTATGAGTACATGAGCAATGGCACTTTAGCGAGTCTTCTTTTCAATGGGGAGAGACCCAGTTGGAAACTAAGACTACAAATTGCAATTGGGATTGCTAGAGGACTTGTTTATTTACATGAAGAGTGTAGCACCCGAATCATCCACTGTGACATAAAGCCTCAAAACATACTCCTTGATGATCACTTTAATGCAAGGATTTCCGACTTTGGATTGGCCAAACTCTTGAACATGAATCAGAGCAGAACACATACTGCCATAAGGGGAACAAAAGGGTATGTTGCAGTTGAATGGTTTAAAAATTTGCCCATCACTGCTCAGGTTGATGTCTATAGTTATGGTGTAGTGCTACTTGAGATAATTTCTTGCAGAAGAACTGTTGAAGTGGAGCCAGAAGATGAAGAGAGAGCAATACTAACTGATTGGGCTTATGACTGCTACAAAGAAGGTACTCTTAGTGCTTTGGTTCAGGGTGACAAGGAGGCATTGGAGGACAAGAATTTGGAGAAGTTGGTAATGATTGCCATTTGGTGTGTTCAAGAGGATCCAGGTCTTAGACCCTCCATGAGAAATGTGAACCAGATGCTTGAAGGTATTGTTGAAGTGCCAGTTCCACCATGCCCCTCCCAAATTAGTATTCAGTATTCTCTAGATTAA 2427 0.4137 MASSLLPFLLCSLILLPICVLAQTRSKIAIGDSLIAKTNTTPWLVSPSGDFAFGFLQPNGTELFLLSIWYAKIPEKTMVWYANGDNPAPKDSKVELSASDGLVLTAPNGDQLWKTEGLTGGVSHGVFNDTGNFVLEDGSSNSVWETFKDPRDTLLPSQVLEKGEKLSSRLRENNFSKGRFELLFKNDGNLVMYSINLPSGYVNDGNYYESGTVESNTSSAGTKLVFDRSGDLYVLREKNEKSNISDVSSVSTTQFYLRATLDFDGVFTLYQHPKGSNGNGGWTTVWSQPDNICSYLISTGSGICGYNSYCTLGGDKRPKCQCPKKYSLLDPNDPYGSCKPDFIQGCAEDELSNRKDLYDFEVLIDTDWPVSDSVLQKPFTEDQCRQSCMEDCLCSVAIFRLGDHCWKKKLPLSNGKVDATLNGAKAFLKVRKDNSSFVVPPNPIIVNKNRNTLILVGSVLLGSSAFLNLVLIGAICFSTSFIFQYKKKLGRVSRSDTTVATNLRCFTYEELEEATNGFDKELGRGAFGIVYEGVINIGSTTRVAVKKLNTFLLEEVHKEFKNELNVIGLTHHKNLVRLLGCCEAGSERLLVYEYMSNGTLASLLFNGERPSWKLRLQIAIGIARGLVYLHEECSTRIIHCDIKPQNILLDDHFNARISDFGLAKLLNMNQSRTHTAIRGTKGYVAVEWFKNLPITAQVDVYSYGVVLLEIISCRRTVEVEPEDEERAILTDWAYDCYKEGTLSALVQGDKEALEDKNLEKLVMIAIWCVQEDPGLRPSMRNVNQMLEGIVEVPVPPCPSQISIQYSLD* 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00299 808 ProSiteProfiles Protein kinase domain profile. 516 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g00299 808 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 34 798 - -
Rops4g00299 808 Gene3D - 23 148 IPR036426 -
Rops4g00299 808 CDD STKc_IRAK 522 789 - -
Rops4g00299 808 ProSiteProfiles Bulb-type lectin domain profile. 31 148 IPR001480 -
Rops4g00299 808 Pfam Protein tyrosine and serine/threonine kinase 518 786 IPR001245 GO:0004672|GO:0006468
Rops4g00299 808 Gene3D Transferase(Phosphotransferase) domain 1 595 793 - -
Rops4g00299 808 FunFam Serine/threonine-protein kinase 151 296 - -
Rops4g00299 808 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 22 148 - -
Rops4g00299 808 PIRSF SRK 1 807 IPR024171 GO:0004674
Rops4g00299 808 Gene3D Phosphorylase Kinase; domain 1 490 594 - -
Rops4g00299 808 ProSitePatterns Serine/Threonine protein kinases active-site signature. 637 649 IPR008271 GO:0004672|GO:0006468
Rops4g00299 808 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 595 794 - -
Rops4g00299 808 SUPERFAMILY alpha-D-mannose-specific plant lectins 64 212 IPR036426 -
Rops4g00299 808 CDD B_lectin 44 150 IPR001480 -
Rops4g00299 808 SMART blect_4 33 150 IPR001480 -
Rops4g00299 808 SMART serkin_6 516 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g00299 808 Pfam D-mannose binding lectin 77 161 IPR001480 -
Rops4g00299 808 SUPERFAMILY Protein kinase-like (PK-like) 498 787 IPR011009 -
Rops4g00299 808 ProSitePatterns Protein kinases ATP-binding region signature. 522 547 IPR017441 GO:0005524
Rops4g00299 808 Gene3D - 149 277 IPR036426 -
Rops4g00299 808 FunFam S-receptor-like serine/threonine-protein kinase 486 594 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00299 Rops-Chr4 9049242 9051668 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00299 502 788 Receptor kinase-like Gene Family AT1G60800 41.837 6.35e-69 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Rops4g00299 PK_Tyr_Ser-Thr 7.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00299 - - gmx:100815462 1250.73