Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00278 ATGGGGCCAAACGTAGCGGTGGCGGAGCAGTTGAGAAAAGACGGCAACGTTTATTTCAAGAAAGACCGTTTCAGAGCTGCCATCGATGCTTACACTGAGGCAATTACGCTGTGTCCGAATGTTCCGATTTATTGGACGAATCGTGCTCTGTGCCATCTCAAGCGCAATGAATGGGAGAGGGTAGAGGAAGATAGTCGGAGAGCAATTCAGCTGGACAGCAAGTCGGTTAAGGCTCATTATATGTTGGGACTTGCATTGCTACGGAAACAAGACTATGCCAAAGGAATCAAAGAATTGGAGAAGGCTTTGGATCTCGGGAGAGGTGCCAATCCCAACGGCTATATGGTAGAAGAAATATGGCAAGAACTTGCAAAGGCAAAATACCTAGAGTGGGAACGATCATCGACCAAGCGATCCTGGGATTTGCAGTGCTTGAAAGAAGCTTGTGAGTCTGCTCTAAAGGAAAAACATTTTCTCGATGACTCCCAAATGGAAGGATTTCTAGATGATGCTACTACTTCCCATTTGGAACAATTAGAGGCTTTAGAAAGAATCTTCAATAAAGCTGCAGAGGCTGACACACCAGCTGAGGTGCCAGATTATCTATGCTGTAGAATCACACTTGATATTTTTCATGATCCTGTAATCACTCCAAGTGGACTCACGTATGAGAGGGCAGTGATTCTTGATCATCTTGAGAAGGTGGGTAAATTTGACCCGGTCACGCGAGAACCACTTGATCCATCACAGCTAGTACCAAACTTGGCCATTAAGGAAGCGGTCCAGGCATTCTTGGACAAACATGGATGGGCCTACAAGGCAATGTATGTGTAA 834 0.4556 MGPNVAVAEQLRKDGNVYFKKDRFRAAIDAYTEAITLCPNVPIYWTNRALCHLKRNEWERVEEDSRRAIQLDSKSVKAHYMLGLALLRKQDYAKGIKELEKALDLGRGANPNGYMVEEIWQELAKAKYLEWERSSTKRSWDLQCLKEACESALKEKHFLDDSQMEGFLDDATTSHLEQLEALERIFNKAAEADTPAEVPDYLCCRITLDIFHDPVITPSGLTYERAVILDHLEKVGKFDPVTREPLDPSQLVPNLAIKEAVQAFLDKHGWAYKAMYV* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00278 277 SMART tpr_5 76 109 IPR019734 GO:0005515
Rops4g00278 277 SMART tpr_5 42 75 IPR019734 GO:0005515
Rops4g00278 277 SMART tpr_5 8 41 IPR019734 GO:0005515
Rops4g00278 277 Pfam Tetratricopeptide repeat 66 108 - -
Rops4g00278 277 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 196 274 IPR013083 -
Rops4g00278 277 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 8 273 IPR045200 GO:0000209|GO:0061630
Rops4g00278 277 Gene3D Tetratricopeptide repeat domain 4 138 IPR011990 GO:0005515
Rops4g00278 277 Pfam U-box domain 198 270 IPR003613 GO:0004842|GO:0016567
Rops4g00278 277 Pfam Tetratricopeptide repeat 15 40 IPR019734 GO:0005515
Rops4g00278 277 ProSiteProfiles TPR repeat profile. 8 41 IPR019734 GO:0005515
Rops4g00278 277 CDD RING-Ubox_CHIP 198 268 IPR045202 -
Rops4g00278 277 SUPERFAMILY TPR-like 7 126 IPR011990 GO:0005515
Rops4g00278 277 SMART Ubox_2 201 264 IPR003613 GO:0004842|GO:0016567
Rops4g00278 277 SUPERFAMILY RING/U-box 192 272 - -
Rops4g00278 277 ProSiteProfiles U-box domain profile. 197 271 IPR003613 GO:0004842|GO:0016567
Rops4g00278 277 ProSiteProfiles TPR repeat profile. 76 109 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00278 Rops-Chr4 8516939 8523115 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00278 2 273 U-box Gene Family AT3G07370 68.015 1.17e-140 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00278 K09561 - gmx:100796519 501.13