Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00271 ATGGCTTCTTCGTCAAAATCCAAACCCCAAAGGATATACGACGTGTTCATCAATTTCAAGAGGGAAGACACTCATGAAAATTTCGTTTCTCATCTCCATGCTGCCCTCTCAAACGCGGGCATCAAAACTTTCCTTGATGATGAAAATCTTGAAAGGGGAAACGAGTTAGGACCATCACTAATGCGAGTAATAGAAGGATCTCAGATTTTTCTTGTCGTCTTATCAAAGAATTATGCTTCTTCAACATGGTGCTTGCGAGAACTAGTTAAGATCCTCAATTGTAATCGAGTATCAGGATATGCTATTATGCCTATTTTCAATGATGTTGATCCATATGAGGTGCGAAGACAAAGGGGGGATTATGAGAAAGCCTTTACGAAACATGAAGAAAGATTCAAAGATGATTCAAAGAAAATGGTAGAAGTGAAAAGATGGAGAGAAGCTTTGACACAAGTGGCCTGTGTCTATGGTTGGGTAATTAAGAATAATAATGAAAGTACTGTTATGAAGCAAATTATTGATGCAGTTTTCACAAAACTAGGCAGAAAATACTTATCTATCGAAAACATTCTAGTTGGATTAGAATCCCATAAGGAACAGTGGACCCGTAAAAACTCTTCCCCAAAAGCCAAATCCCAATGGATATACGACGTGTTCATCAATTTCCGGGGGGAGGACACTCGTAACAATCTCGTTTCTCATCTGTATGCTGCGCTCTCAAATGCGGGAATCAACACTTTCCTTGATGATGAAAATCTTGAAAGGGGAAAAGAGCTGGGACCAGCACTAATGCGAGCAATAGAAGGATCTCAGTTTTTGCTTGTAGTATTATCAAAGAATTATGCTTCCTCAACATGGGGGGATTATGAGAAAGCATTTGTGAAGCATGAAGAAAGCTTCAACGATGATTTAGAAAAAATGGTGGAATTGAAAAGATGGAGAGAAGCTTTGACACAAGTGGTCAATTACTCTGGTTGGGATATCAGAAATAAGAATGAACGCACAGTTGTGGAGCAAATTGTTGACGATATTTTGAGAAGAGCAAACAAAAAATACTTATTTATTCCAGACTTTTCAATTGGATTAGAATCCCGTGCGGAACATATGATTCAATTTTTAAGGAAGAAAGCAAGAGGAGTTTGTATGATAGGAATTTGGGGAATGGGAGGTACTGGTAAAAGCACCATAGCCAAAGTCATCTACAACGAACTTCTTCATGAATTTGAAGAACAAAGTTTCCTTGCAAATATTAGAGAAGTTTGGGAGAAAGATAGGGGCCAAAGTGATTTACAGGAAAAACTTCTTTCAGATATCCTTAAAACTGGAAAGATGAAAGTGCATAGCATTGAGTGGGGGAAAGCAATGATCAAGGAAAGACTTCGCACTAAAATGACACTTATTGTACTTGATGATGTGAATAAGTGTGAGCAATTAAATGCATTATGTGGAAATCGTGATGAGATCGGTCCAGGAAGTATAATAATCATTACAACTAGAGATGTACGTCTACTCAATGTACTTGAAGTTGACCTAATCTATAAAGTGGAGGAATTAAATGAAAGGGAGTCCCTTGAGCTTTTCAGTTGGCATGCTTTTAGGGAAGCTAGACCAAGAGAAGACTTCCTCAGTATGTCAAGAAATGTAGTTGCGTATTGTGGAGGATTGCCACTAGCTCTTGAAGTCCTTGGATGTCACTTGTATAAGAGAAGAAAAGAAGAGTGGGAGAGTGTGTTATCAAAACTACAAAGACTACCCAATGATCAAATACAAGCGAAACTAAAAATCAGTTTTGATGGATTAGAGGATCATATGGCGAAGGATATATTTCTTGACATATGTTGTTTCTTTATTGGTAAGGACAGAGCCTATGTTACGGAGATACTAAATGGTTGTGGTCTACATGCTGATATTGGAATAACAGTCCTGGTAGAAAGGAGCCTCATAAAAGTCGAAAGGAATAACAAACTTGGAATGCATGATTTGCTACGAGACATGGGAAGAGAGATTGTTCGGAAAAGTTCAACAAAGGAACTTGAGAAGCGTAGTCGATTGTGGTTTTATGAGGATGTACTTGATGTATTGACAACAAATACAGGGACAAAAGCTATTGAGGGATTAGCCTTGAAGTTGCATGAAACTCGTGGATGTCGCTTCAATGCTCATGCTTTTGAGAAAATGAAGAGGCTGAGACTTTTGCAACTTGATCATGTACAACTCAATGGAGATTATGGGCATCTTTCTAAGCAACTAAGATGGATCTGTTGGAAAGCATTTCCTTTAAGATACATACCTGACAAATTTTATCAGGGAAATGTAGTTGCAATTGACTTAAAACACAGTAATCTTAAACTAGTTTGGAAGGAACCTCAGTTGTTGAAGTCACTAAAAATCCTCAATCTAAGTCATTCCAAGTATTTGACAAACACTCCTGACTTTTCAAAAGTACCAAATCTTGAAAAGCTCATTCTAAAAGATTGTCCGAATTTGTGCAAGATACATCAGTCCATTGGAGATCTCCACAATATTCTTCTGATAAATTTGGAGGACTGTACAAGTCTGAGCAATCTTCCAAGTATGATATATAAGTTGAAATCTTTGAAAACTCTCATCCTTTCTGGTTGTTCAAAGCTTGACAAATTGGAAGAAGATATAGTGCAAATGGAATCATTGACAACTCTAATTGCAGAAAATACTGCTGTGAAACAAGTTCCCTTTTCAATAGTAAGATCAAAAAGCATTGGATATATATCCCTATGTGGATATGAAGGATTATCAAGTGATGTTTTTCCTTCTCTTATTTGGTCTTGGATGTCACCAACAATGAAGCCACTGCCGTATATTCACCCATTTGAAGTTATGTCGTCTTCTCTAGTTTCATATAATTTGCAAAAAAATTGTTTTGGGGATCTCTCAACAATGCTTAACAGTCTTTCAAAACTTCGAAGTGTTTGGGTGCAATGTGAAACGAAGTTTCAACTATCTAAGGAATTAAGAACAATTATGGATGACATACACCATGCAAATTTTACTGAATTAGGAATAACTTTATATGCTTCACAAATCTCAAACCATTCCTTAAGCTCTTATTTGATTGGAATGGGAAGCTACCAAGAAGTCATCGATACTCTCAGGCAGAGCATATCAGAGGGATTGGCAACTAGAGGGTCTTTCGATGCTCTTCTATCGGGTGATAATTATCCTTATTGGTTGACCCATATAGGTGAAGGACATTCAGTGCTTTTCACAGTGCCTCAAGATAATCATTGTCACATGAAGGGAATGACTTTGTGCATTTTTTATTCATCAAATCCTAAAAAAAGAGCAGTTGAATGTCTTATTAGTGTCTTGATAGTTAATTACACAAAGTGCACCATCCAAATATACAAGCGAGACACAATAATTTCCTTTAATGATGAAGATTGGCAGGGTCTAATATCACATCTAGGATCGGGTGACAAAGTGGAGATTTTGGTATCTTTCGGGCATGGTTTGGCCGTCAAGAAGATAGTTGTCTATCTAATATATGATAAATCAATTGACATGGAAATGGAGCCTTCTCTGAAGCCGAAGAAAGAGTCCAAGAAAAATTCCTTTGAAAGCTTTGTCATGGAATCCATGCCTCCTCCTCCTCCTTCCTCAAAATCCAGATCCCAATGGATATACGACGTGTTCATCAGTTTTAGGACGGTGGACACTCGCAAGAATTTCGTTTCTCATCTCTATGCTGCCCTCTCCAATGCAGGAATCAACACTTTTCTTTATGATGAAAAGCTTCCAAAGGGATATACGATTGGGCCAGAAATATTGCGAGCGAAAGAAGAGTCTCAGATTTTGATTGTGATCTTCTCAAAGAACTATTGTTCCTCGACATGGTGCTTGGATGAACTTGCTAGGTTCCACGAGTGGGTTCCAGTATCAGAAAGATGTGTTGCGCCTATTTTCTATGATGTTGATCCATCTGAAGTGCGGAAACAGAGCGGTTGTTATGAGAAAGTCTTTGCAGAGCATGAAGAAAGATTCAAAAATGATTTTGAGATGATGAAAGTGAAAAGATGGAGAAGCTTTGACACAAGTGGCTAA 4080 0.3779 MASSSKSKPQRIYDVFINFKREDTHENFVSHLHAALSNAGIKTFLDDENLERGNELGPSLMRVIEGSQIFLVVLSKNYASSTWCLRELVKILNCNRVSGYAIMPIFNDVDPYEVRRQRGDYEKAFTKHEERFKDDSKKMVEVKRWREALTQVACVYGWVIKNNNESTVMKQIIDAVFTKLGRKYLSIENILVGLESHKEQWTRKNSSPKAKSQWIYDVFINFRGEDTRNNLVSHLYAALSNAGINTFLDDENLERGKELGPALMRAIEGSQFLLVVLSKNYASSTWGDYEKAFVKHEESFNDDLEKMVELKRWREALTQVVNYSGWDIRNKNERTVVEQIVDDILRRANKKYLFIPDFSIGLESRAEHMIQFLRKKARGVCMIGIWGMGGTGKSTIAKVIYNELLHEFEEQSFLANIREVWEKDRGQSDLQEKLLSDILKTGKMKVHSIEWGKAMIKERLRTKMTLIVLDDVNKCEQLNALCGNRDEIGPGSIIIITTRDVRLLNVLEVDLIYKVEELNERESLELFSWHAFREARPREDFLSMSRNVVAYCGGLPLALEVLGCHLYKRRKEEWESVLSKLQRLPNDQIQAKLKISFDGLEDHMAKDIFLDICCFFIGKDRAYVTEILNGCGLHADIGITVLVERSLIKVERNNKLGMHDLLRDMGREIVRKSSTKELEKRSRLWFYEDVLDVLTTNTGTKAIEGLALKLHETRGCRFNAHAFEKMKRLRLLQLDHVQLNGDYGHLSKQLRWICWKAFPLRYIPDKFYQGNVVAIDLKHSNLKLVWKEPQLLKSLKILNLSHSKYLTNTPDFSKVPNLEKLILKDCPNLCKIHQSIGDLHNILLINLEDCTSLSNLPSMIYKLKSLKTLILSGCSKLDKLEEDIVQMESLTTLIAENTAVKQVPFSIVRSKSIGYISLCGYEGLSSDVFPSLIWSWMSPTMKPLPYIHPFEVMSSSLVSYNLQKNCFGDLSTMLNSLSKLRSVWVQCETKFQLSKELRTIMDDIHHANFTELGITLYASQISNHSLSSYLIGMGSYQEVIDTLRQSISEGLATRGSFDALLSGDNYPYWLTHIGEGHSVLFTVPQDNHCHMKGMTLCIFYSSNPKKRAVECLISVLIVNYTKCTIQIYKRDTIISFNDEDWQGLISHLGSGDKVEILVSFGHGLAVKKIVVYLIYDKSIDMEMEPSLKPKKESKKNSFESFVMESMPPPPPSSKSRSQWIYDVFISFRTVDTRKNFVSHLYAALSNAGINTFLYDEKLPKGYTIGPEILRAKEESQILIVIFSKNYCSSTWCLDELARFHEWVPVSERCVAPIFYDVDPSEVRKQSGCYEKVFAEHEERFKNDFEMMKVKRWRSFDTSG* 1360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00271 1359 ProSiteProfiles TIR domain profile. 214 348 IPR000157 GO:0007165
Rops4g00271 1359 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 158 IPR035897 -
Rops4g00271 1359 Gene3D - 7 188 IPR035897 -
Rops4g00271 1359 Gene3D - 289 354 IPR035897 -
Rops4g00271 1359 Gene3D Ribonuclease Inhibitor 703 1018 IPR032675 -
Rops4g00271 1359 ProSiteProfiles TIR domain profile. 1219 1347 IPR000157 GO:0007165
Rops4g00271 1359 Pfam TIR domain 1221 1353 IPR000157 GO:0007165
Rops4g00271 1359 Pfam TIR domain 216 290 IPR000157 GO:0007165
Rops4g00271 1359 Pfam TIR domain 13 186 IPR000157 GO:0007165
Rops4g00271 1359 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 350 612 IPR027417 -
Rops4g00271 1359 SUPERFAMILY Toll/Interleukin receptor TIR domain 1211 1353 IPR035897 -
Rops4g00271 1359 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 216 964 IPR044974 GO:0006952
Rops4g00271 1359 SUPERFAMILY Toll/Interleukin receptor TIR domain 210 326 IPR035897 -
Rops4g00271 1359 Gene3D - 517 601 IPR042197 -
Rops4g00271 1359 SUPERFAMILY "Winged helix" DNA-binding domain 588 694 IPR036390 -
Rops4g00271 1359 SUPERFAMILY L domain-like 710 983 - -
Rops4g00271 1359 FunFam Disease resistance protein (TIR-NBS-LRR class) 9 182 - -
Rops4g00271 1359 Gene3D - 1213 1357 IPR035897 -
Rops4g00271 1359 Gene3D - 209 288 IPR035897 -
Rops4g00271 1359 Pfam NB-ARC domain 365 587 IPR002182 GO:0043531
Rops4g00271 1359 PRINTS Disease resistance protein signature 459 473 - -
Rops4g00271 1359 PRINTS Disease resistance protein signature 552 566 - -
Rops4g00271 1359 PRINTS Disease resistance protein signature 382 397 - -
Rops4g00271 1359 PRINTS Disease resistance protein signature 861 877 - -
Rops4g00271 1359 SMART till_3 1220 1359 IPR000157 GO:0007165
Rops4g00271 1359 SMART till_3 215 323 IPR000157 GO:0007165
Rops4g00271 1359 SMART till_3 12 155 IPR000157 GO:0007165
Rops4g00271 1359 Gene3D - 355 512 IPR027417 -
Rops4g00271 1359 ProSiteProfiles TIR domain profile. 11 180 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00271 Rops-Chr4 8447713 8458033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00271 197 907 WRKY Transcription Factor Family AT4G12020 29.255 3.39e-77 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00271 - - aprc:113850721 1394.79