Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00260 ATGCCTCCTTCTTCCTCAGAATCCAAACCTCCTCCTTCCTCAGAATCGAAACCTCAGTCTCCCTCAGAATCCGAACCTCCTCCTTCCTCAGAGTCGAAACCTCCTTCTCCCTCAGAATCCGAACCTCCTCCTTCCTCAAAAGCCAAATCCCAATGGATATATGACGTGTTCATCAATTTCCGGGGGGAAGACACTCGTAGGAATTTCGTTTCTCATCTGTATGCTGCCCTCTCAAATGCGGGAATCAACACTTTCCTTGATGATGAAAAGCTTCAAAAGGGAAACGAGCTGGGACCAGAACTAATGCGAGCAATAGAAGGGTCTCAGATATCTATAGTTGTTTTCTCGCAAAATTACACTGAATCTTGTTGGTGTCTTGATGAACTGGTAAAAATCATGGAATGCCACGATAATAGAGGTCAGGTTGTTATGCCCGTATTTTATGATGTTACCCCATCATATATACGGCATCTGTCACAACCTTCCGGAGAAATTTTCCAAGGTAGAAGAAAGTTGTTGAATGGCAATTTGGATGGATGGAAGAAAGCACTGAGTGAAGCTTCAAATTTGAGTGGTTGGAATGTGAGGAGTTTTAGTAATGAAAATATTGTTGTGAAGCAAATTATTGATACAGTTTTGAAAAAAATGGATACAAGATACTTATCTATCACAGATTTCCCAGTTGGATTAGAATCCCGTGTGGAGCAAGTGATTCAATTTTTAAGAAAGAAAAGAAGAGGAGTTTTTATAGTAGGAATTTGGGGGATGGGAGGCATTGGTAAAAGCACAATAGCCAAAGTCATCTTTAATAAACTTCTTCATGAATTTGAAGATCAAAGTTTTCTTGCAAATATTAGAGAAGTTTGGAAGAAAGAAAGGGGTCAAATTGATTTACAAGAACAACTTCTTTCAGATATCCTTAAAACTAGAAAGATGAAGGTGCATAGCATTGAGTGGGGGAAAGCTATGATCAAGGAAAGACTTCGCACAAAAAGAGCACTTATTGTACTTGATGATATTAATAAGTTTGAACAATTAAATGCACTATGTGGAAATCGTTATGGGATTGGTTCAGGAAGTATAATAATCATTACAACAAGAGATGCACGTATACTCAATGTCCTTGGAGTCGACTATGTTTATAAAGTGGAGGAACTGAATGAAGTGGAGTCCCTTGAGCTTTTCAACTGGCATGCTTTTAGGGAAGCTAGCTTAGGAAAAGGCTTTCTTAATCTCTCAAGAAATGTAGTTGCTTATTGTGGAGGACTACCACTAGCTCTTGAAGTACTTGGATGTTACTTGTACGAAAGGAAAAAAGAGGAGTGGCACAGTGTATTATCAAAACTAAGAAGAATACCCAATGATGAAATACAAGAGATACTAAAAATTAGTTTTGATGGTTTAAGGGATGATATGGAGAAAGATATATTTCTTGACATATGTTGTTTCTTTATTGGTAAGGATAGAGCCTATGTTACGGAGATACTAAATGGTTGTGGTTTACATGCTGATATTGGAATAACAGTCTTGGTAGAAAGGAGCCTCATAAAAGTTGATAGGAATAACAAACTTGGGATGCATGATTTGTTACGAGACATGGGAAGAGAGATTGTTCGAGAAAGTTCAATAAAGGAATCTGAGAAGCGTAGTCGATTGTGGTTTCATGAGGATGTACTTGATGTGCTGACAAAAAATAAGGGGACAGAAGCTATTGAGGGATTGGCCTTGAAGTTGCATGAAACCAATAGATATTGCCTCAATGCTAATGCTTTTGAGGAAATGAAGAGATTGAGACTGTTGCAACTTGATCATGTACAACTTATCGGAGATTATGGGCATTTGTCTAAGCAACTGAGATGGATTTGCTGGCATGGATTTCCTTTAAAATACATACCTGATAAATTTTATCAGGGAAATGTCATTGCAATTGACTTAAGACACAGTAATCTTACACAAATCTGGAAGCAACCCCAGTTGCTAGAGTGGCTAAAAATCCTCAACCTTAGTCATTCCAAGTACTTGACAAGCACCCCTGACCTTTCAAAACTGCCAAATCTTGAAAAGCTCATTATGAAAGATTGTCCAAATTTGTGTAAGATACACCAGTCCATTGGAGATCTCCGCAATCTTCTTTTGATAAATTTGAAAGACTGTATAAGTCTTAGAAATCTCCCCAGTGTGATATATAAGTTGACATCTTTGAAAACTCTCATCCTTTCTGGTTGTTCAAAGATTGACAAATTGGACGAGGATATAGTGCAAATGGAATCCTTGGCAACTCTAATTGCAGAAAATACTGCTGTGCAACAAGTGCCCTTTTCAATAATAAGATCAAAAAGCATTGGCTATGAAGCCCGGATACTCCAAAAATCCAGAAGTATCGGTGTCGGACACGTGTCGGACACGGATACGTCCCCGATACGTCTGGATACGTACTAA 2439 0.3838 MPPSSSESKPPPSSESKPQSPSESEPPPSSESKPPSPSESEPPPSSKAKSQWIYDVFINFRGEDTRRNFVSHLYAALSNAGINTFLDDEKLQKGNELGPELMRAIEGSQISIVVFSQNYTESCWCLDELVKIMECHDNRGQVVMPVFYDVTPSYIRHLSQPSGEIFQGRRKLLNGNLDGWKKALSEASNLSGWNVRSFSNENIVVKQIIDTVLKKMDTRYLSITDFPVGLESRVEQVIQFLRKKRRGVFIVGIWGMGGIGKSTIAKVIFNKLLHEFEDQSFLANIREVWKKERGQIDLQEQLLSDILKTRKMKVHSIEWGKAMIKERLRTKRALIVLDDINKFEQLNALCGNRYGIGSGSIIIITTRDARILNVLGVDYVYKVEELNEVESLELFNWHAFREASLGKGFLNLSRNVVAYCGGLPLALEVLGCYLYERKKEEWHSVLSKLRRIPNDEIQEILKISFDGLRDDMEKDIFLDICCFFIGKDRAYVTEILNGCGLHADIGITVLVERSLIKVDRNNKLGMHDLLRDMGREIVRESSIKESEKRSRLWFHEDVLDVLTKNKGTEAIEGLALKLHETNRYCLNANAFEEMKRLRLLQLDHVQLIGDYGHLSKQLRWICWHGFPLKYIPDKFYQGNVIAIDLRHSNLTQIWKQPQLLEWLKILNLSHSKYLTSTPDLSKLPNLEKLIMKDCPNLCKIHQSIGDLRNLLLINLKDCISLRNLPSVIYKLTSLKTLILSGCSKIDKLDEDIVQMESLATLIAENTAVQQVPFSIIRSKSIGYEARILQKSRSIGVGHVSDTDTSPIRLDTY* 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00260 812 Pfam NB-ARC domain 231 455 IPR002182 GO:0043531
Rops4g00260 812 MobiDBLite consensus disorder prediction 1 42 - -
Rops4g00260 812 SUPERFAMILY Toll/Interleukin receptor TIR domain 45 193 IPR035897 -
Rops4g00260 812 MobiDBLite consensus disorder prediction 1 47 - -
Rops4g00260 812 SUPERFAMILY "Winged helix" DNA-binding domain 455 562 IPR036390 -
Rops4g00260 812 ProSiteProfiles TIR domain profile. 52 216 IPR000157 GO:0007165
Rops4g00260 812 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 217 480 IPR027417 -
Rops4g00260 812 FunFam Disease resistance protein (TIR-NBS-LRR class) 50 218 - -
Rops4g00260 812 Gene3D Ribonuclease Inhibitor 539 775 IPR032675 -
Rops4g00260 812 SMART till_3 53 190 IPR000157 GO:0007165
Rops4g00260 812 Gene3D - 385 469 IPR042197 -
Rops4g00260 812 Pfam TIR domain 54 217 IPR000157 GO:0007165
Rops4g00260 812 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 54 759 IPR044974 GO:0006952
Rops4g00260 812 Gene3D - 220 379 IPR027417 -
Rops4g00260 812 PRINTS Disease resistance protein signature 250 265 - -
Rops4g00260 812 PRINTS Disease resistance protein signature 327 341 - -
Rops4g00260 812 PRINTS Disease resistance protein signature 420 434 - -
Rops4g00260 812 PRINTS Disease resistance protein signature 729 745 - -
Rops4g00260 812 Gene3D - 47 219 IPR035897 -
Rops4g00260 812 SUPERFAMILY L domain-like 576 775 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00260 Rops-Chr4 8148005 8150986 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00260 44 775 WRKY Transcription Factor Family AT4G12020 30.585 6.05e-86 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00260 - - aprc:113850721 1048.88