Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00256 ATGGCTTCTTCATCATCCTCCAATCCTCAATGGGTCGACGACGACGTGATCCTCAGCGTTAATTTCCAGGGGAAGACACACAATCCCCAAGGAATTTTCTCTTCCATGATGCGTTATTTCGGCATGTCTCACAATACCACCACAAGATTTCAGCAGACCCATGAACATCAACCTGGTCCTTCTTCCTCAAAATCTAATTCTAAATCCAAATGGATTTATGACGTGTTCATCAATTTTCAGGGGGAAGACACTCGTTTTGGTTTCGTTTCTCATCTGTATGCTGCCCTCTCAAATGCCGGAATCAACACTTTTCTTGATGATGAAAAGCTTCAAAAGGGAGAGGAGCTGGGACCAGAACTAATGCGAGCAATAGAAGGGTCTCAGATATCTATCGTTGTTTTCTCGCAAAATTACATTCAATCTAGTTGGTGTCTTGATGAACTGCTCAAAATCATGGAATGTCATACAATTAGAGGTCAGGTTGTTCTGCCCGTATTTTATGATGTTACCCCAACATATCTCCGTCATCTGAATGATACTCTAGGAGAAGCCGTGGGAAGACACGAAGTGAGGAAAAAATACCTGGCTGACAACTACCCGCAGAAAAAACAGTGGTACAAAGCACTAAGCGATGCTTCACATCTGGCTGGTTGGGATGTCAGAAATTGCATTAATGAAAACGCTGTTGTGAAGGATATTGTTGATACAGGGACGGAAGCTATTGAGGGATTGACCTTGAAGTTGCACAGAACCGATAGATATTGCTTCAATGCTAATGCTTTTGAGAAAATGAAGAGATTGAGACTGTTGCAACTTGATCATGTACAACTCATCGGAGATTATGGCCAGCTTTCTAAGCAATTGAGATGGGTTTGTTGGCATGGATTTCCTTTAAAATACATACCTGACAAATTTTGTCAGGCAAATGTAGTTGCAGTTGACTTAAAACATAGTAATCTTAAACTAGTGTGGAAGGAACCCCAGTTGTTGGGTTGGTTGAAAATCCTCAATCTTAGTCATTCCAAGTACTTGACAAACACACCTGACTTTTCAAAGCTGCCGAATCTTGAAAAGCTCATTCTGAAAGATTGTCCAAGTTTGTGCAAGATACACCAGTCCATTGGAGAGCTACGTAATCTTCTTCTGATAAATTTGAAGGATTGTACAAGTCTTAGCAATCTCCCTAGTGTTATATATAAGTTGACATCTTTGAAAACTCTCATCCTTTCTGGCTGTTCAAAGATTAACAAATTGGAAGAAGATATAGTGCAGATGGAATCCTTGACAACTCTAATTGCAGAAAATACTGCCGTGAAACGAGTGCCCTTTTCAATAGTGAGATCAAAAAGCATTGGATATATATCTCTATGTGGATATGAAGGATTATCTCGTGATGTTTTTCCTTCTCTCATCTGGTCTTGGATGTCACCAACAATGAAGCCACTATCTTGTATTCTTCCATTTGAAGTCATGTCATCATCTCTAGTTTCTATTAATTTGCAGAATAATTGTTTGGAGGATCTCTCACTAATTCTTAGTAGTTTTTCAAAACTTCGAAGTGTTTTGGTGCAATGCGAAATGGAGGTTCAGCTATATAAGGAATTAAGAACAATTCTAGATGACATATATGGTGTAAATTTTACAGAATTAGAAATAACATCGTCTGCATCACAAATCTCAAACCATTCCTTGAGGTCTTATTTGATTGGAATGGGAAGTTACCATGAAGTCTTCAATACTCTCAACAAGAGCATATCAGAGGGATTGACAACCAAAGGATCATTTGATGTTCTTCTACCAGGTGACAATTATCCTTATTGGTTGACCCATACAGGTGAAGGATGTTCAGTTCTTTTCACTGTGCCTCAAATTAGTCATTGTCACATGAAGGGAATGGCTTTGTGTGTTTTATATTTGTCAAACCTTGAAAACACAAGTGTTGAATGTATTATTAGTGTCTTGATCATTAATTACACAAAGTGCACCATTCAGATATACAAGCGAGACACGACAATTTCCTTTAACGATGAAGATTGGCAAGGCTTGATATCACATCTAGGATCGGGTGACAAAGTGGAGATTTTTGTAATTTTTAGGCATGGATTGGTTATCAAGAGGACACGTGTCTATCTAATATATGATGAATTAATTGACATGGAAATGGAGCCTTCTCTAGAGCCAAAAGAAGAGCTCAAGGAAGAGCCAAAAGTAGAGCCAAAGGAAAAGTCCAAGGAAAAGCTAAAGGAAGAGCCAAAAGAAGATTCGAAGGAAGAGCCAAAGAAAAATGTCTTTGTGGAAATGGAGCCTTCTCTGGTATCACAGGAAAAGTCAATGGAAGACCCAAAGAAAGAGCCGGAGGAAGAGCCAAAGAAAAATGCCTTTGTTCAATCCAAACTCTGCCTGCTTAGTGGCTTGGGCTTTGGGGCATCTGAACTTGTGAAGATCATCAATTTTAGGCCTCGATTTTTCAATTCTCGGATCAATCATGGCTTCGACCAGAGGAATGCCTTTCTAATGTCATTATTTGAGTCAAAGGAGATGCTTCACAAGGCCATTGTGAGAAACCCTTCACTCTTGCTATACAACAATCGCTGTGACATCAAAGCTACTGTTACACTCTCTGAAGAGCTCGGTGTGAATAAAAGGGACCTTATTCAATTGCTCCTTTTGCGGCCAACAATCCTTACGAGGACTTCCTTTGATGATGAGCCACTGGAATATATAGACAGACTAGGGCTTTCTAAGGATTCAAAGATGTACAAATATGTGGTGACAATAATAGGGATCTCTCGTGTGGAAACAATTCGTGAGAAAGTAGCGAATTCAGCGTGGTTTTGTTTTTCTGATGATGAGATATTTGGCCTTTTAGGAGGTCCCCTCATGTTTTGA 2889 0.3949 MASSSSSNPQWVDDDVILSVNFQGKTHNPQGIFSSMMRYFGMSHNTTTRFQQTHEHQPGPSSSKSNSKSKWIYDVFINFQGEDTRFGFVSHLYAALSNAGINTFLDDEKLQKGEELGPELMRAIEGSQISIVVFSQNYIQSSWCLDELLKIMECHTIRGQVVLPVFYDVTPTYLRHLNDTLGEAVGRHEVRKKYLADNYPQKKQWYKALSDASHLAGWDVRNCINENAVVKDIVDTGTEAIEGLTLKLHRTDRYCFNANAFEKMKRLRLLQLDHVQLIGDYGQLSKQLRWVCWHGFPLKYIPDKFCQANVVAVDLKHSNLKLVWKEPQLLGWLKILNLSHSKYLTNTPDFSKLPNLEKLILKDCPSLCKIHQSIGELRNLLLINLKDCTSLSNLPSVIYKLTSLKTLILSGCSKINKLEEDIVQMESLTTLIAENTAVKRVPFSIVRSKSIGYISLCGYEGLSRDVFPSLIWSWMSPTMKPLSCILPFEVMSSSLVSINLQNNCLEDLSLILSSFSKLRSVLVQCEMEVQLYKELRTILDDIYGVNFTELEITSSASQISNHSLRSYLIGMGSYHEVFNTLNKSISEGLTTKGSFDVLLPGDNYPYWLTHTGEGCSVLFTVPQISHCHMKGMALCVLYLSNLENTSVECIISVLIINYTKCTIQIYKRDTTISFNDEDWQGLISHLGSGDKVEIFVIFRHGLVIKRTRVYLIYDELIDMEMEPSLEPKEELKEEPKVEPKEKSKEKLKEEPKEDSKEEPKKNVFVEMEPSLVSQEKSMEDPKKEPEEEPKKNAFVQSKLCLLSGLGFGASELVKIINFRPRFFNSRINHGFDQRNAFLMSLFESKEMLHKAIVRNPSLLLYNNRCDIKATVTLSEELGVNKRDLIQLLLLRPTILTRTSFDDEPLEYIDRLGLSKDSKMYKYVVTIIGISRVETIREKVANSAWFCFSDDEIFGLLGGPLMF* 963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00256 962 SMART till_3 72 215 IPR000157 GO:0007165
Rops4g00256 962 MobiDBLite consensus disorder prediction 727 764 - -
Rops4g00256 962 Gene3D - 70 239 IPR035897 -
Rops4g00256 962 SUPERFAMILY L domain-like 245 521 - -
Rops4g00256 962 Gene3D Ribonuclease Inhibitor 240 577 IPR032675 -
Rops4g00256 962 Pfam mTERF 796 916 IPR003690 GO:0003690|GO:0006355
Rops4g00256 962 ProSiteProfiles TIR domain profile. 71 213 IPR000157 GO:0007165
Rops4g00256 962 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 242 448 IPR044974 GO:0006952
Rops4g00256 962 FunFam Disease resistance protein (TIR-NBS-LRR class) 69 242 - -
Rops4g00256 962 Gene3D Transcription termination factor 3, mitochondrial 781 952 IPR038538 -
Rops4g00256 962 Pfam TIR domain 73 235 IPR000157 GO:0007165
Rops4g00256 962 SUPERFAMILY Toll/Interleukin receptor TIR domain 62 218 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00256 Rops-Chr4 8059268 8070482 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00256 73 220 Miscellaneous Gene Families AT5G45220 30.065 1.23e-10 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Rops4g00256 mTERF 1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00256 - - gmx:100806743 709.138