Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00253 ATGGGAAAAGTTTGTATGGTGGGGATTTGGGGAATGGGTGGCATTGGTAAAAGCACCATAGCCAAAGTAATCTACAATAAACTTATTCATGAATTTGAAGATCAAAGTTTCCTAGCAAATATTAGAGAAGTTTGGGAAAAAGAGAGTGGTCAAATTGATTTACAAGAACAACTACTTTCAGATATTCTTGATACTAGAAGGATGAAGGTACTTGGCATTGAGTGGGGGAAAGCTATAATCAAGGAAAGACTTTGCACAAAAAGGGCACTTATTGTCCTTGATGATGTGAATAAGTTTGAGCAACTAAATGTACTATGTGGAAATCGTGATGAGATTGGTAAAGGAAGTATAATAATCATTACAACAAGAGATGTACGCATACTCGATGTCTTTGGAGTTTACTATATCTATCGAGTGGAGGAATTGAATGAAGCGGAGTCCCTTGAGCTTTTCAATTGGCATGCTTTTAGGGAAGCTAGTTCAAGAAAAGGCTTTCTTAGTCTCTCAAAAAATGTAGTTGCTTATTGTGGAGGACTACCACTAGCTCTTGAAGTACTTGGATGTCACTTGTACAAGAGAAGAAAAGAAGAGTGGCAAAGTGTATTATCAAAATTGCAAAGTATACCCAACAATCAAATACAAGAGAAACTAAAAATAAGCTTTGATGGTTTAAGGGATCACACGGAGAAGGATATATTTCTTGATATATGTTGTTTCTTCATTGGCAAGGATAGAGCTTATGTTACGGAGATACTAAATGGCTGTGGTCTATATGCTGATATTGGAATAACAGTCCTAGTAGAAAGAAGCCTCATAAAAGTTGAAAGAAATAATAAACTTGGAATGCATGATTTGCTACGAGACATGGGAAGAGAGATTGTTCGATTGCTGGAAAGGCTGAAAATCCTCAATCTTAGCCATTCCAAGTACTTGACAAACACCCCTGACTTTTCAAAATTGCCAAATCTTGAAAAACTCATTATGAAAGATTGTCCAAATTTGTGCAAGATACACCAGTCCATTGGAGATCTCCGCAATCTTCTTCTATTAAATTTGAAGGACTGTACAAGTCTTAGCAATCTCCCAAATGTGATACAAAAGTTGACATCTTTGAAAACTCTCATCTTATCTGGTTGTTCAAAGATTGACAAATTGGAAGAAGATATCGTGCAAATGGAATCCTTGACAACTCTAATTGCAGAAAATACTACTGTGAAACAAGGATTGACAATCAATGGGTCATTTGATGTTCTTCTTCCGGGTGACAATTATCCTTATTGGTTAACCCATACTGGTGAAGGGAATTCGGTGCTTTTCAAAGTTCCTCAAGATAGTCATAGTCATATGAAGGGAATGGCTTTGTGTGTTTTTTATTCATCAAACCTTGAAAACATGGCAGTTGAATGTATTATCAGTGTCTTGATTGTCAATTACACAAAATGCACCATCCAGATATACAAGCAAGACACAATAATTTCTTTTAATAGGGAAGATTGGCAGGGCTTAATATCACATCTAGGATCAAGTGACAAAGTGGAGATTTTTGTAAATTTTAAGCATGGATTGGTTGTCAAGAAGACAGTTGTATATCTAATATATGATGAGTTAATTGACATGGAACTGGAGCCTTCTCTGGAGTCAAAGGAAGAGCCAAAGGAAGAGCCAAAGGAAAAGCCAAAGGAAGAGCCAAAGGAAGAGCCAAAGGAAAAGCCAAAGGAAGAGCTAAAGGAAGAGCCAAAGGAAAATGCTTTTGTAATGAAGACAACAGAAGTACTTGCAATGAAGGGATTTGTCTCCAAGAGAGTGCCAAGATAA 1815 0.3669 MGKVCMVGIWGMGGIGKSTIAKVIYNKLIHEFEDQSFLANIREVWEKESGQIDLQEQLLSDILDTRRMKVLGIEWGKAIIKERLCTKRALIVLDDVNKFEQLNVLCGNRDEIGKGSIIIITTRDVRILDVFGVYYIYRVEELNEAESLELFNWHAFREASSRKGFLSLSKNVVAYCGGLPLALEVLGCHLYKRRKEEWQSVLSKLQSIPNNQIQEKLKISFDGLRDHTEKDIFLDICCFFIGKDRAYVTEILNGCGLYADIGITVLVERSLIKVERNNKLGMHDLLRDMGREIVRLLERLKILNLSHSKYLTNTPDFSKLPNLEKLIMKDCPNLCKIHQSIGDLRNLLLLNLKDCTSLSNLPNVIQKLTSLKTLILSGCSKIDKLEEDIVQMESLTTLIAENTTVKQGLTINGSFDVLLPGDNYPYWLTHTGEGNSVLFKVPQDSHSHMKGMALCVFYSSNLENMAVECIISVLIVNYTKCTIQIYKQDTIISFNREDWQGLISHLGSSDKVEIFVNFKHGLVVKKTVVYLIYDELIDMELEPSLESKEEPKEEPKEKPKEEPKEEPKEKPKEELKEEPKENAFVMKTTEVLAMKGFVSKRVPR* 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00253 604 Gene3D - 1 133 IPR027417 -
Rops4g00253 604 PRINTS Disease resistance protein signature 366 382 - -
Rops4g00253 604 PRINTS Disease resistance protein signature 176 190 - -
Rops4g00253 604 PRINTS Disease resistance protein signature 83 97 - -
Rops4g00253 604 PRINTS Disease resistance protein signature 6 21 - -
Rops4g00253 604 SUPERFAMILY "Winged helix" DNA-binding domain 212 297 IPR036390 -
Rops4g00253 604 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 236 IPR027417 -
Rops4g00253 604 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 299 399 IPR044974 GO:0006952
Rops4g00253 604 Gene3D Ribonuclease Inhibitor 270 464 IPR032675 -
Rops4g00253 604 Pfam NB-ARC domain 5 211 IPR002182 GO:0043531
Rops4g00253 604 MobiDBLite consensus disorder prediction 544 583 - -
Rops4g00253 604 Gene3D - 141 225 IPR042197 -
Rops4g00253 604 SUPERFAMILY RNI-like 293 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00253 Rops-Chr4 8009846 8037506 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00253 7 294 WRKY Transcription Factor Family AT5G45050 36.678 6.46e-50 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00253 - - pcin:129301479 466.848