LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops4g00246	ATGCCTCCTTCTTCCTCAGAATCCAAACCTCCTCCTTCCTCAGAATCGAAACCTCCTTCTCCCTCAGAATCCGAACCACCTCCTTCCTCAAAAGCCAAGTCCCAATGGATATATGACGTGTTCATCAATTTCCGGGGGGAAGACACTCGTAGGAATTTCGTTTCTCATCTGTATGCTGCCCTCTCAAATGCGGGAATCAACACTTTCCTTGATGACGAAAAGCTTCAAAAGGGATACAAGCTGGGACCAGAACTAAAGCGAGCAATAGAAGGGTCTCAGATATCTATCGTTGTTTTCTCACAAAATTACACTGAATCTAGTTGGTGTCTTAATGAACTGGTAAAAATCATGGAATGCCACGCAACTAGAGGTCAGGTTGTTCTGCCCGTATTTTATGATGTTACCCCATCATTTATACGGCATCTGTCACAACCTTCCGGAGGAATTTTCCGACGTAGAAGAAGGTTGTTCAATGACAATTTGGGTGGATGGAAGAAAGCACTGAGTGAAGCTTCAAATTTGAGCGGTTGGAATGTGAGGAGTTTTAGTACTGAAAATGTTGTTGTGAAGCAAATTATTGATACAGTTCTGAAAAAAATGGATACAAGATACTTATCTATCACAGATTTTCCAGTTGGATTAGAATCCCGTGTGGAGCAAGTGATTCAATTTTTAAGAAAGAAAAGAAGAGGAGTTTGTATGGTAGGAATTTGGGGGATGGGAGGCATTGGCAAAAGCACCATTGCCAAAGTCATCTTTAATAAACTTCTTCATGAATTTGAAGATCAAAGTTTTCTTGCAAACATTAGAGAAGTTTGGAAGAAAGAAAGGGGCCAAATTGATTTACAAGAACAACTTCTTTCAGATATCCTTAAAACTAGAAAGATGAAGGTGAATAGCATTGAGTGGGGGAAAGCTATGATCAAGGAAAGACTTCGCACAAAAAGAGCACTTGTTGTACTTGATGATGTCAATAAGTTTGAACAATTAAATGCACTATGTGGAAATCGTGATGGGATTGGTCCAGGAAGTACCATAATCATTACAACAAGAGATGCACGTATACTCAATGTCCTTGGGGTTGACTATGTCTATAGAGTGGAGGAATTGAATGACACAGAGTCCCTTGAGCTTTTCAACTGGCATGCTTTTAGGGAAGCTAGCTCAGGAAAAGGCTTTCTTAATCTCTCAAGAAATGTAGTTGCATATTGTGGAGGACTACCACTAGCTCTTGAAGTGCTTGGATGTTACTTGTACGAAAGGAAAAAAGAAGAGTGGCACAGTGTATTATCAAAACTAAGAAGAATACCCAATGATGAAATACAAGAGAAACTAAAAATTAGTTTTGATGGTTTAAGGGATGAAATGGAGAAAGATATATTTCTTGACATATGTTGTTTCTTTATTGGCAAGGATAGAGCCTATGTTACGGAGATACTAAATGGTTGTGATCTACATGCTGATATTGGAATAGCAGTCTTGATAGAAAGGAGCCTCATAAAAGTTGAAAGGAATAACAAACTTGGAATGCATGATTTACTACGAGACATGGGAAGAGAGATTGTTCGAGAAAGTTCAATAAAAGAACCTGAGAAGCGTAGTCGATTGTGGTTTCATGAGGATGTACTTGATGTGCTGACAAAAAATAAGGGGACAGAAGCCATTGAGGGATTGGCCTTGAAGTTGCACGAAACCAAAAGATATTGCCTCAATGCTAATGCTTTCGAGGAAATGAAGAGATTGAGACTGTTGCAACTTGATCATGTACAACTTATCGGAGATTATGGGCATTTGTCTAAGCAACTGAGATGGATTTGCTGGCATGGATTTCCTTTAAAATACATACCTGATAAATTTTATCAGGGAAATGTCATTGCAATTGACTTAAGACACAGTAATCTTAAACAAATCTGGAAGCAACCCCAGTTGCTAGAGTGGCTAAAAATCCTCAACCTTAGTCATTCCAAGTACTTGACAAACACCCCTGACTTTTCAAAACTGCCAAATCTTGAAAAGCTCATTATGAAAGATTGTCCAAATTTGTGTAAGATACACCAGTCCATTGGAGATCTCCACAATCTTCTTTTGATAAATTTGAAAGACTGTATAAGTCTTAGAAATCTCCCCAGTGTGATATATAAGTTGACATCTTTGAAAACTCTCATCCTTTCTGGTTGTTCAAAGATTGACAAATTGGACGAGGATATAGTGCAAATGGAATCCTTGGCAACTCTAATTGCAGAAAATACTGCTGTGCAACAAGTGCCCTTTTCAATAATAAGATCAAAAAGCATTGGATATATATCCCTATGTGGATATGAAGGATTATCACGTGATGTTTTTCCTTCTCTCATTTGGTCTTGGATGTCACCAACAATGAAGCCATTATCCTGTACTCCCCCATTTGGAGTGATGTCGTCATCTCTAGTTTCTATTAATTTGCAGAATAATTGTTCAGAGGATCTCTCACCAATGATTAGTAGGCTTTCAAAACTTCGAAGTGTTTGGGTGCAATGTGAAACGGAGATTCAGCTATTTAAGGAATTAAAAGCAATTCTGGATGAGATACATTGTGTAAATTTTACTAAATTAGAAATAACATCAAATGCATCACAAATCTCAAACCATTCCTTAAGGTCTTATTTGATTGGAATGGGAAGTTACCATGAAGTCTTCAATACTCTCGGCAAGAGCATATCAGAGGGATTAACAACCAACGGGTCATTTGATGTTCTTCTTCCGGGTGATAAGTATCCTTATTGGTTGACCCATACAGGTGAAGGACATTCGGTGTTGTTCACGATGCCTCAAGATAATCAATATCATATGAAGGGAATGGCTTTGTGTGTTTTTTATTCATCAAACCTTGAAAACACAACAATTGAATGTATTACTAGTGTCTTGATTGTTAATTACACAAAGTGCACCATCCAGATATACAAGCGAGACACAACAATTTCCTTTAACGATGAAGATTGGCAGGGCATAGTATCACATCTAGGATCAGGTGACAAAGTGGAGATTTTTGTAACTTTTGAGCATGGATTGGTCGTCAAGAAGATAGTCGTCTATCTGGTATATGATGAATTAATTGATGTGGAAATGGATCCTTCTTTGGAGCCAACATATGATGAATTAATTGACGTGGATATGGATCCTTCTCTAGAGCCAAAGGAGCAGCCAAAGGAAGAGTCAAAGGAAGAGCTAAAGGAAGAGTTGAAGAAAAATGTCTTTGTTCAACTCAGAAACATCAAGAAAGATACTCTGTCAATCAATGCCTACTTGCGTAAGGTGAAGAAATTAGTTAATTCACCAAGAGTAGTTGGAAACCCAATTTCCACAGAAGAGCACATTGATGCCATCTTTGATGGCTTAGGTGAATACTATGATTGCTTCATTACATCTGTTACTTCAAGATTTGAGCATACACCATTGAAGAAATCGAAGCTTTACTAA	3456	0.3802	MPPSSSESKPPPSSESKPPSPSESEPPPSSKAKSQWIYDVFINFRGEDTRRNFVSHLYAALSNAGINTFLDDEKLQKGYKLGPELKRAIEGSQISIVVFSQNYTESSWCLNELVKIMECHATRGQVVLPVFYDVTPSFIRHLSQPSGGIFRRRRRLFNDNLGGWKKALSEASNLSGWNVRSFSTENVVVKQIIDTVLKKMDTRYLSITDFPVGLESRVEQVIQFLRKKRRGVCMVGIWGMGGIGKSTIAKVIFNKLLHEFEDQSFLANIREVWKKERGQIDLQEQLLSDILKTRKMKVNSIEWGKAMIKERLRTKRALVVLDDVNKFEQLNALCGNRDGIGPGSTIIITTRDARILNVLGVDYVYRVEELNDTESLELFNWHAFREASSGKGFLNLSRNVVAYCGGLPLALEVLGCYLYERKKEEWHSVLSKLRRIPNDEIQEKLKISFDGLRDEMEKDIFLDICCFFIGKDRAYVTEILNGCDLHADIGIAVLIERSLIKVERNNKLGMHDLLRDMGREIVRESSIKEPEKRSRLWFHEDVLDVLTKNKGTEAIEGLALKLHETKRYCLNANAFEEMKRLRLLQLDHVQLIGDYGHLSKQLRWICWHGFPLKYIPDKFYQGNVIAIDLRHSNLKQIWKQPQLLEWLKILNLSHSKYLTNTPDFSKLPNLEKLIMKDCPNLCKIHQSIGDLHNLLLINLKDCISLRNLPSVIYKLTSLKTLILSGCSKIDKLDEDIVQMESLATLIAENTAVQQVPFSIIRSKSIGYISLCGYEGLSRDVFPSLIWSWMSPTMKPLSCTPPFGVMSSSLVSINLQNNCSEDLSPMISRLSKLRSVWVQCETEIQLFKELKAILDEIHCVNFTKLEITSNASQISNHSLRSYLIGMGSYHEVFNTLGKSISEGLTTNGSFDVLLPGDKYPYWLTHTGEGHSVLFTMPQDNQYHMKGMALCVFYSSNLENTTIECITSVLIVNYTKCTIQIYKRDTTISFNDEDWQGIVSHLGSGDKVEIFVTFEHGLVVKKIVVYLVYDELIDVEMDPSLEPTYDELIDVDMDPSLEPKEQPKEESKEELKEELKKNVFVQLRNIKKDTLSINAYLRKVKKLVNSPRVVGNPISTEEHIDAIFDGLGEYYDCFITSVTSRFEHTPLKKSKLY*	1152

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops4g00246	1151	SUPERFAMILY	L domain-like	510	869	-	-
	Rops4g00246	1151	SUPERFAMILY	Toll/Interleukin receptor TIR domain	29	177	IPR035897	-
	Rops4g00246	1151	Gene3D	-	205	363	IPR027417	-
	Rops4g00246	1151	PRINTS	Disease resistance protein signature	311	325	-	-
	Rops4g00246	1151	PRINTS	Disease resistance protein signature	713	729	-	-
	Rops4g00246	1151	PRINTS	Disease resistance protein signature	234	249	-	-
	Rops4g00246	1151	PRINTS	Disease resistance protein signature	404	418	-	-
	Rops4g00246	1151	Pfam	NB-ARC domain	215	439	IPR002182	GO:0043531
	Rops4g00246	1151	SMART	till_3	37	174	IPR000157	GO:0007165
	Rops4g00246	1151	Pfam	TIR domain	38	201	IPR000157	GO:0007165
	Rops4g00246	1151	MobiDBLite	consensus disorder prediction	1	26	-	-
	Rops4g00246	1151	MobiDBLite	consensus disorder prediction	1	31	-	-
	Rops4g00246	1151	FunFam	Disease resistance protein (TIR-NBS-LRR class)	34	202	-	-
	Rops4g00246	1151	Gene3D	-	31	204	IPR035897	-
	Rops4g00246	1151	Gene3D	Ribonuclease Inhibitor	568	887	IPR032675	-
	Rops4g00246	1151	Gene3D	-	369	453	IPR042197	-
	Rops4g00246	1151	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	201	464	IPR027417	-
	Rops4g00246	1151	ProSiteProfiles	TIR domain profile.	36	200	IPR000157	GO:0007165
	Rops4g00246	1151	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	38	822	IPR044974	GO:0006952

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops4g00246	Rops-Chr4	7885261	7892350	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops4g00246	28	759	WRKY Transcription Factor Family	AT4G12020	31.076	8.20e-85	301

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops4g00246	-		-	aprc:113850721	1368.21