Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00243 ATGGAATCCATGCCTCCTCCTTACTCAAAATCCAAACCCAAATGGATATATGATGTGTTCATCAATTTTCGGGGGGAAGACACTCGTAGAAATTTCGTTTCTCATCTGTATGCTGCCCTCTCTAATGCGGGAATCAACACTTTCCTTGATGATGAAAAGCTTGAAAAGGGAAATGAGCTGGGACCAGAACTGATGCAAGCAATAGAAGGGTCTCAAATATCTATCGTTGTTTTCTCACAAAAGTACACTGAATCTAGTTGGTGTCTTGATGAACTGGTAAAAATCATGGTATGCCGTGCAATCAGAGGTCAGGTTGTTCTGCCGGTATTTTATGATGTTGCCCCTTCGTATTTACGGTATCTGGGAGAAACATACGGAGAAGCTTGCTATGTTTGTATTCCGAAGGAATTTGATTACGGTAGTGCACTAAGCGAAGCAGCAGGGTTGGGTGGTTGGGATGTGAGAAATTTCAGTAATGAAAGCAGTGTTGTGAAGCAAGTTGTTTCTACAGTTTTAAAAAGACTAGACAGAAAATACTTACCAATCACAGACTTTCCAGTTGGGTTAGAATCTCGTGTGGAGCAAGTAATTCAATTTTTAAGAAAGAAAACAAGAGAAGTTTGTATAGTAGGGATTTGGGGTATGGGAGGCATTGGTAAGAGCACCATAGCCAAAGTCATCTACAATAAACTTCATCATGAATTTGAATTTCGAAGTTTCCTTCCAAATATTAGAGAAGTTTGGGAGAAGAACAGGGGACAAATTGATTTACAAGAACAACTTCTTTCGGATATCTTTGTAACTAGAAAGATGAAGGTGCATAGTATTGAGTGGGGAAAAGCTATAATCAAGGAAAGACTTTGCGCAAAAAGGGCACTTGTTGTACTTGATGATGTAGACAAGTTTGAGCAATTAAATGCACTATGTGGAAATCGTGATGGGATTGGTCTAGGAAGTATAATAATCATTACAACAAGAGATGTACGTCTACTTGATGTCCTTGGAGTTGACTTTGTCTATGGAATAGAGGAATTGAATGAAGAGGAGTCCCTTGACCTTTTCAGTTGGCATTCGTTCAGGAAAGCTAGTCAAGAGAAGACTTCCTTAGTCTCTCAAAAGATGCAGTTGCTTACTGTGGAGGACTACCACTAG 1152 0.3958 MESMPPPYSKSKPKWIYDVFINFRGEDTRRNFVSHLYAALSNAGINTFLDDEKLEKGNELGPELMQAIEGSQISIVVFSQKYTESSWCLDELVKIMVCRAIRGQVVLPVFYDVAPSYLRYLGETYGEACYVCIPKEFDYGSALSEAAGLGGWDVRNFSNESSVVKQVVSTVLKRLDRKYLPITDFPVGLESRVEQVIQFLRKKTREVCIVGIWGMGGIGKSTIAKVIYNKLHHEFEFRSFLPNIREVWEKNRGQIDLQEQLLSDIFVTRKMKVHSIEWGKAIIKERLCAKRALVVLDDVDKFEQLNALCGNRDGIGLGSIIIITTRDVRLLDVLGVDFVYGIEELNEEESLDLFSWHSFRKASQEKTSLVSQKMQLLTVEDYH* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00243 383 FunFam Disease resistance protein (TIR-NBS-LRR class) 13 177 - -
Rops4g00243 383 SMART till_3 16 153 IPR000157 GO:0007165
Rops4g00243 383 PRINTS Disease resistance protein signature 209 224 - -
Rops4g00243 383 PRINTS Disease resistance protein signature 286 300 - -
Rops4g00243 383 ProSiteProfiles TIR domain profile. 15 175 IPR000157 GO:0007165
Rops4g00243 383 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 136 IPR035897 -
Rops4g00243 383 Gene3D - 164 337 IPR027417 -
Rops4g00243 383 Pfam NB-ARC domain 190 372 IPR002182 GO:0043531
Rops4g00243 383 Pfam TIR domain 17 174 IPR000157 GO:0007165
Rops4g00243 383 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 367 IPR027417 -
Rops4g00243 383 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 365 IPR044974 GO:0006952
Rops4g00243 383 Gene3D - 2 134 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00243 Rops-Chr4 7835922 7837772 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00243 7 354 WRKY Transcription Factor Family AT4G12020 27.841 9.82e-31 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00243 - - aprc:113850721 497.278