Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00241 ATGCTTCGGTTTCTTTCAACTGGGTCGAATCTCTTTCAGCATTTTACTTACACCCCAGTTGTAAAAGCTTTGCAAGTGTTCACTTCTGCCACCTATTCGACCAATGTCCTAGCCCAAACTAAGGTTGAAGTGCAAGAATTTAGTGACAAATGGAAAAATGCTACTGAAGTTTTGAGTAAATGGGGTTGCAGTGATGATGATTTGATGAGAATATTTGGCCGCTGCCCCTCATTGCGCAATGCTGATCCTACTCAGGTTCAATCCAAACTCTGCCTGCTGAGTGGATTGGGCTTAGGGGCATCTGAACTTGTGAAGATCATCAATTGCAGGCCTCGATTTTTCAGGTCTCGGATTAACCTTGGCCTTGACAAGAGGATTGCCTCTCTAATTTCATTATTTGAGTCAAAGGAGATGCTTCTCAAGGCCATTGTGAGAAACCCTTCACTCTTGCTATGTAACAATCGCTTTGACATCACAGCTACTGTTGAACTCTATGAAGAGTTAGGCGTGAAGAAAAGGGACTTGATTCAAATGCTCCTTTTGCGGCCAACAATCCTTTCGAGGACTTCCTTTGATGATGAGAAGCTGGAATATATAGGCAGGCTAGGGCTCTCCAAGGATTCAAAGATGTACAAATATGTGGTGACAATAATAGGGATCTCTCGTGTGGATACAATTCGTGAGAAAATAGCGAATTTAACAAGGTTTGGTTTTTCTGACGATGAGATACTTGGCCTTTTTGGGAGGTCTCCTCATGTGTTGACATTGTCAACTGATAAGGTTCAGAGGAACATGACTTTCATTTTAGGCACAATGAAGCTTGAAGCTAAGATAATCCTAAAGTACCCATATCTCTTGTATGCTAATGTGGATACTGTTTTGAAGCCACGAGTGCTTCTAGCAATGAAGATACAAGATATGGATTCTAAGCTGCAAATCACGATACCCAAAATACTTAGGTCACTGAGGATGGCAGAGGAGAGGTTTTTAAATTCGTTCATCAAATGCCATGACAAGGAAATTGCCAATGAATTAATGGAATTCTATGAAAGCACAAAAGAGGTGAAGAGATTAGCTGAGTCATCAAGGAAGTGCATTATTAGAGGATTCCCTTTCTGA 1119 0.412 MLRFLSTGSNLFQHFTYTPVVKALQVFTSATYSTNVLAQTKVEVQEFSDKWKNATEVLSKWGCSDDDLMRIFGRCPSLRNADPTQVQSKLCLLSGLGLGASELVKIINCRPRFFRSRINLGLDKRIASLISLFESKEMLLKAIVRNPSLLLCNNRFDITATVELYEELGVKKRDLIQMLLLRPTILSRTSFDDEKLEYIGRLGLSKDSKMYKYVVTIIGISRVDTIREKIANLTRFGFSDDEILGLFGRSPHVLTLSTDKVQRNMTFILGTMKLEAKIILKYPYLLYANVDTVLKPRVLLAMKIQDMDSKLQITIPKILRSLRMAEERFLNSFIKCHDKEIANELMEFYESTKEVKRLAESSRKCIIRGFPF* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00241 372 FunFam Mitochondrial transcription termination factor family protein 122 343 - -
Rops4g00241 372 Gene3D Transcription termination factor 3, mitochondrial 121 343 IPR038538 -
Rops4g00241 372 PANTHER CGI-12 PROTEIN-RELATED 41 338 IPR003690 GO:0003690|GO:0006355
Rops4g00241 372 SMART mt_12 208 239 IPR003690 GO:0003690|GO:0006355
Rops4g00241 372 SMART mt_12 140 171 IPR003690 GO:0003690|GO:0006355
Rops4g00241 372 SMART mt_12 104 135 IPR003690 GO:0003690|GO:0006355
Rops4g00241 372 SMART mt_12 276 308 IPR003690 GO:0003690|GO:0006355
Rops4g00241 372 SMART mt_12 69 99 IPR003690 GO:0003690|GO:0006355
Rops4g00241 372 SMART mt_12 244 275 IPR003690 GO:0003690|GO:0006355
Rops4g00241 372 Pfam mTERF 56 186 IPR003690 GO:0003690|GO:0006355
Rops4g00241 372 Pfam mTERF 56 151 IPR003690 GO:0003690|GO:0006355
Rops4g00241 372 Pfam mTERF 110 329 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00241 Rops-Chr4 7818051 7821045 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Rops4g00241 mTERF 1.8e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00241 K15032 - gmx:100799629 519.235