Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00234 ATGGCACTATGCCTCACAGTTACAGATAAGAAAATTTTATGGTCATTGTTGAGAGCAACAACAGCAGTGAACCTTCCACTTCATACAATTTGTTATAAAGTAGCAAGCTTGACTCAAGCTATATTAGACACAAAGCAAACTTCTAATTTGAAAGATCGATACTTTCTTGGGGAGCAGTTGGGTTGGGGACAGTTTGGTGTCATAAGAGCATGCTCTGACAAATTGACCGGAGAGGTTTTGGCCTGCAAATCAATTGCTAAAGATAGGTTGGTTACTTCAGATGATGTGCAGAGTGTTAAACTTGAGATTGAGATAATGGCTAAGTTATCCGGGCACCCAAATATTGTAGATCTCAAGGCAGTTTATGAAGAGGAGGATTTTGTTCATTTGGTGATGGAGCTTTGTGCTGGTGGGGAGTTGTTTCACCTGTTAGAGAAGCGGGGGCGATTTTCTGAATCTGAAGCTAGGGTTCTCTTTAGACATCTCATGCAGATGGTTATGTATTGCCATGAAAATGGGGTTGTTCATAGAGATTTGAAGCCTGAAAACATTCTCTTGGTGACTAGATCCTCCTCATCTCCAATTAAATTGGCAGACTTTGGGCTTGCAACCTACATCAAGCCTGGACCGAGTTTGCATGGGGGTTATTCTTTACATTCTACTGAGTGGGATGCCTCCATTTTGGGGAAGGACAAAATCACGGATATTCGAAGCTGTTAA 720 0.4167 MALCLTVTDKKILWSLLRATTAVNLPLHTICYKVASLTQAILDTKQTSNLKDRYFLGEQLGWGQFGVIRACSDKLTGEVLACKSIAKDRLVTSDDVQSVKLEIEIMAKLSGHPNIVDLKAVYEEEDFVHLVMELCAGGELFHLLEKRGRFSESEARVLFRHLMQMVMYCHENGVVHRDLKPENILLVTRSSSSPIKLADFGLATYIKPGPSLHGGYSLHSTEWDASILGKDKITDIRSC* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00234 239 ProSitePatterns Protein kinases ATP-binding region signature. 60 87 IPR017441 GO:0005524
Rops4g00234 239 SMART serkin_6 54 238 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g00234 239 ProSiteProfiles Protein kinase domain profile. 54 239 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g00234 239 FunFam Calcium-dependent protein kinase 1 56 139 - -
Rops4g00234 239 Pfam Protein kinase domain 57 211 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g00234 239 Gene3D Transferase(Phosphotransferase) domain 1 140 226 - -
Rops4g00234 239 ProSitePatterns Serine/Threonine protein kinases active-site signature. 174 186 IPR008271 GO:0004672|GO:0006468
Rops4g00234 239 Gene3D Phosphorylase Kinase; domain 1 56 139 - -
Rops4g00234 239 SUPERFAMILY Protein kinase-like (PK-like) 51 210 IPR011009 -
Rops4g00234 239 PANTHER SERINE/THREONINE-PROTEIN KINASE 42 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00234 Rops-Chr4 7718906 7719835 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00234 45 209 EF-hand Containing Proteins AT5G12180 50.909 3.45e-55 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Rops4g00234 Pkinase 9.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00234 - - psat:127091783 337.421