Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00231 ATGGAAAACCAGTTCTTTTTGAATGTTGGGGTGTCCCATCCCTTACACTATGAACCTTCACCTCCTTCTTCAATGCCCACATGGCAATCATTATCTTCAGCCATGGAAATTCAATCAACAGTTCTGAATTGTTCCTCTGAGCAAACCCAAGATTGCTTTTATACCCAAACATGGGACAAGTCAACAGATCATCATGGTCTTCACTTTGATTCAGCACTGAGTTCAATGGTCTCATCCCCTGCAACATCTAACCCCAACATGTCCAATGAGAGTTTCATGATGAGGAAATTGATAGGGAAATTGGGAACAGTTGGCAGCAACTCTGATGAGATCTCACCACATTCTCAGCCTTTGGTTGTGCCATCTTCTTACAATAACAGCACCAACAATTCATGTTACAGCACCCCTTTGAGTTCCCCTCCAAAGCTTAACATTGCCCCAGTGATGAACCACTTGGTGAAAGAGAACTTGCCTAGTTTGGGTGGAAAACCAATGGCTGTGAAATCCAGTGTGGCAGAATTCTCAGCTGATCCTGGTTTTGCTGAGAGAGCTGCAAAGTTTTCTTGCTTTGGCAGCAGGAGTTTCAATGACAGGACTAGCCAATTGGTGGTGAACAATGCTGAATTAGCCCAAAGATCTGTTTCAGTAATGGAAAAAGGGAATCTACCTAGAGTCTTAAGTAGTCCATCACTCAAAAATTTTGGATCTCAAATGGTTGCCCAAGAGAGCAAGAATTCTCAATTGCAGGAGCAGGATAGAATGGAAGTGACCAATTCTCAAGAGGAATCTACAATCTCTGAGCAAACCCCAAATGGGGAAACAGATGTCAAAACCAGCCCTGATATGAATTCAAGAAAAAGAAAAGCTTCTTCCAAAGGAAAAGCCAAAGAAGCTTCATACTCTTCCAAGGGTGTTGAAGGTAGTGGTGAAGACTCAAATGCAAAACGCAGCAAGCCAAATGAAGGTGAGGGAAATGAAAATGGCCAAGTGAAGATTGAGGAAGAGTGCAAAGGGGGTACCAATAACGCAGGTGAAGAGAAACAGAACAAGGGCAACTCAAAACCTCCTGAACCACCAAAAGATTACATTCATGTTAGAGCAAGAAGAGGTCAAGCTACTGATAGCCATAGTCTTGCAGAACGTGTAAGGAGGGAGAAAATCAGTGAGAGGATGAAGCTTCTTCAAGATCTTGTACCAGGTTGCAATAAGGTTACTGGTAAAGCACTTATGCTAGATGAAATTATAAATTATGTTCAGTCATTGCAGCGTCAAGTTGAGTTCCTGTCAATGAAATTGGCTTCTGTTAACACCAGGATGGATTTTAGTATTGAAAGTCTTATATCAAAAGATATATTTCAATCAAATAATAATTCTTTGGCACAACCAATACTCCCAATAGATTCCTCAGCACCAGCCTTTTATGGTCACCAGCCACAGCAAAACCCAGCTATCCATAACAACATTCCTAATAGAACTGTGACCCACTGCTCAGTGGACCCATTAGATTCTTCTTTATGCCAAAATCTTGGCATGCTTTTACCAGCCCTAAATGGGTTTAATGAAGGTGATTCTCAGTATCCATTAACATTCTCTGAGGATGACCTCCACACTATAGTTCAGATGGGATTAGGCCAAACTTCAAACAGGGAAACACCAATTCAGTCACCAAGTTTCAATGGTTCAAATCAAGTACCCCAGATGAAAGTTGAGCTTTGA 1716 0.4161 MENQFFLNVGVSHPLHYEPSPPSSMPTWQSLSSAMEIQSTVLNCSSEQTQDCFYTQTWDKSTDHHGLHFDSALSSMVSSPATSNPNMSNESFMMRKLIGKLGTVGSNSDEISPHSQPLVVPSSYNNSTNNSCYSTPLSSPPKLNIAPVMNHLVKENLPSLGGKPMAVKSSVAEFSADPGFAERAAKFSCFGSRSFNDRTSQLVVNNAELAQRSVSVMEKGNLPRVLSSPSLKNFGSQMVAQESKNSQLQEQDRMEVTNSQEESTISEQTPNGETDVKTSPDMNSRKRKASSKGKAKEASYSSKGVEGSGEDSNAKRSKPNEGEGNENGQVKIEEECKGGTNNAGEEKQNKGNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTRMDFSIESLISKDIFQSNNNSLAQPILPIDSSAPAFYGHQPQQNPAIHNNIPNRTVTHCSVDPLDSSLCQNLGMLLPALNGFNEGDSQYPLTFSEDDLHTIVQMGLGQTSNRETPIQSPSFNGSNQVPQMKVEL* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00231 571 MobiDBLite consensus disorder prediction 236 278 - -
Rops4g00231 571 FunFam Basic helix-loop-helix transcription factor 368 440 - -
Rops4g00231 571 MobiDBLite consensus disorder prediction 236 362 - -
Rops4g00231 571 SMART finulus 377 427 IPR011598 GO:0046983
Rops4g00231 571 MobiDBLite consensus disorder prediction 309 341 - -
Rops4g00231 571 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 371 421 IPR011598 GO:0046983
Rops4g00231 571 Coils Coil 231 251 - -
Rops4g00231 571 Coils Coil 418 438 - -
Rops4g00231 571 MobiDBLite consensus disorder prediction 547 571 - -
Rops4g00231 571 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 369 440 IPR036638 GO:0046983
Rops4g00231 571 CDD bHLH_AtBPE_like 361 446 - -
Rops4g00231 571 Pfam Helix-loop-helix DNA-binding domain 375 422 IPR011598 GO:0046983
Rops4g00231 571 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 242 480 IPR024097 GO:0006355
Rops4g00231 571 Gene3D - 368 442 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00231 Rops-Chr4 7519294 7522306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00231 1 532 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 43.727 1.75e-109 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops4g00231 HLH 4.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00231 - - gmx:100812081 794.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g01545 8 34869630 34872827 Rops4g00231 4 7519294 7522306 PCT