Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00224 ATGATAGGTGTGGCTGCACGATTCCATGCCCTGGTGGTTCCTCTTGCAGGTGCACAGGTACTGAGACCACAAGTGGAATATATCACTCAACATGCTCTTGTGGAGAACACTGTTGGTGCAACACATGCTCCTGTCCCAACACTGTTGCTGCTGGAACTAGTTGTAAATGTGCCTCAGGTGTTGTTAGGGGAAGGGGAAATCAGAGGGTATGAGCTTGGTCGCCAGCCAGCTAACACTAAGCTATCAAGCAACAAGACTGTCAGGAGGATTCGTGTTAGAGGTGGCAATGTGAAGTGGAGGGCACTGAGATTGGATACTGGAAATTACTCACGGGGAAGTGAGGTTGTAACTCACAAAACTCGTATACTGGATGTGGTTTACAATGCCTCAAATAATGAGCTTGTGCGAACTCAGACTCTTGTCAAAAGTGCTATTGTTCAGGTGGATGCTGCTCCATTCAAGCAGTGGTACCTTCAGCACTATGGTGTTGACATTGGTAAGAAGAAGAAAACAGCTGCCAAGAAGGACTCAGAGGAGGGTGATGCTGCTGCAGAAGGTTGGGATACTCCTGAAGTTGGTGATGAAGTTCAAGTTCATTATACTGGGATGTTGCTTGATGGTACCAAGTTTGATTCCAACTGA 642 0.4688 MIGVAARFHALVVPLAGAQVLRPQVEYITQHALVENTVGATHAPVPTLLLLELVVNVPQVLLGEGEIRGYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSRGSEVVTHKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGKKKKTAAKKDSEEGDAAAEGWDTPEVGDEVQVHYTGMLLDGTKFDSN* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00224 213 FunFam 40S ribosomal protein S8 75 196 - -
Rops4g00224 213 NCBIfam ribosomal protein eS8 68 151 IPR001047 GO:0003735|GO:0005840|GO:0006412
Rops4g00224 213 PANTHER 40S RIBOSOMAL PROTEIN S8 68 179 IPR001047 GO:0003735|GO:0005840|GO:0006412
Rops4g00224 213 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 193 213 IPR001179 GO:0003755
Rops4g00224 213 Pfam Ribosomal protein S8e 68 154 IPR022309 -
Rops4g00224 213 SUPERFAMILY FKBP-like 169 213 - -
Rops4g00224 213 Gene3D - 179 213 IPR046357 GO:0003755
Rops4g00224 213 Gene3D - 75 178 - -
Rops4g00224 213 CDD Ribosomal_S8e_like 68 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00224 Rops-Chr4 7233885 7245331 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00224 68 173 Cytoplasmic Ribosomal Protein Gene Family AT5G59240 90.566 1.35e-63 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00224 K02995 - pcin:129288318 213.001