Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00223 ATGGACGAAGATTTCGAGATGCCAACGATGGAGCCTCCCATGAACGATGACTTTGACTTCGCTGGTGGTGATAACAACAACGTCCCCGTTCTTAAGGTTGGTGAGGAGAAGGAGATTGGAAAGCAAGGGTTGAAGAAGAAGCTTGTTAAGGAAGGTGAAGGTTGGGATACACCTGAAGTTGGTGATGAAGTTCTAGTTCATTATACTGGGACGTTGCTTGATGGCACGAAGTTTGATTCCAGCAGAGATAGGGGAACTCCTTTCAATTTCACGCTTGGACAAGGGCAAGTTATTAAAGGATGGGATGAAGGTATTAAATCCATGAAGAAAGGTGAAAATGCCATTTTCACCATCCCGCCTGAGCTAGCTTACGGTGAATCTGGTTCTCCTCCAACTATTCCTCCCAATGCGACTCTTCAATTTGATGTTGAGTTGCTATCTTGGACTAGTGTGAAGGACATATGTAAGGATGGAGGTTTATTTAAGAAGATACTTATTGAGGGGGAGAAATGGGAGAACCCCAAGGATCCTGATGAAGTTTTAGTTAAGTATGAAGCATGTCTTGATGATGGAACCCTTGTAGCAAAATCTGATGGAGTGGAGTTCACAGTCAGAGAGGGTCATTTTTGTCCTGCATTGTCGAAGGCCGTTAAAACCATGAAGAAGGGAGAGAAAGTGATTTTAACTGTTAAGCCACAATATGGGTTTGGTGAGAAGGGCAAGCCGGCACATGGTGACGAAGGTGCAGTTCCACCTAATGCAACATTGCAGATCACACTTGAGTTAGTTTCTTGGAAGACTGTTTCAGAAGTAACTGATGACAAGAAGGTCACTAAAAAGATCCTCAAGGAAGGGGAAGGATATGAGCATCCAAATGAGGGAGCTGTTGTGAAATTGAAATTAATTGGAAAGCTGCAAGATGGTACTATCTTTTTGAAAAAGGGCCATGACAATGTAGAGGAGCTGTTTGAATTCAAAACAGATGAGGAGCAAGTAATTGATGGGCTTGATCGAGCTGTTGTGACTATGAAGAAGGGTGAGGTGGCATTGTTGACTATCGCACCTGAATATGCTTTCGGTTCATCAGAGTCTCAGCAAGAATTGGCAGTGGTTCCTCCTAACTCCACTGTGTATTACGAGGTTGAGCTAGTATCATTTGAGAAGGAGAAGGAGTCTTGGGACATGAACACTCAAGAGAAGATAGAGGCTGCTGGTAAGAAGAAAGAAGAAGGCAATGCATTGTTTAAAGCTGGTAAATATGCAAGAGCTTCTAAAAGATATGAGAAGGCAATAAAGTTCATTGAGTATGATTCTTCCTTTAGTGAACAAGAGAAGAAGGATGCCAAGGCCTTGAAGATCGCCTGCAATCTGAACAATGCAGCATGCAAGTTGAAGTTGAAAGATTACAAACAAGCAGAGAAATTGTGTACAAAGGTGTTGGACCTTGAGAGCACAAATGTGAAAGCCCTCTATAGAAGGGCCCAGGCATATATCCAGTTGGCTGACTTGGATTTAGCGGAATTTGATATCAAGAAAGCTCTTGAGATTGACCCTAACAATAGGGATGTCAAGCTGGAGTACAAGACTTTGAAGGAAAAAGTGAAGGAGTATAATAAGAAGGACGCAAAATTTTATGGAAATATGTTCAACAAAATGATTGACAGTAATAAATCAGCACCCAAGGATGCTCAACCCATGAGTATTGACAGCAAGGCGTAA 1719 0.4223 MDEDFEMPTMEPPMNDDFDFAGGDNNNVPVLKVGEEKEIGKQGLKKKLVKEGEGWDTPEVGDEVLVHYTGTLLDGTKFDSSRDRGTPFNFTLGQGQVIKGWDEGIKSMKKGENAIFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGLFKKILIEGEKWENPKDPDEVLVKYEACLDDGTLVAKSDGVEFTVREGHFCPALSKAVKTMKKGEKVILTVKPQYGFGEKGKPAHGDEGAVPPNATLQITLELVSWKTVSEVTDDKKVTKKILKEGEGYEHPNEGAVVKLKLIGKLQDGTIFLKKGHDNVEELFEFKTDEEQVIDGLDRAVVTMKKGEVALLTIAPEYAFGSSESQQELAVVPPNSTVYYEVELVSFEKEKESWDMNTQEKIEAAGKKKEEGNALFKAGKYARASKRYEKAIKFIEYDSSFSEQEKKDAKALKIACNLNNAACKLKLKDYKQAEKLCTKVLDLESTNVKALYRRAQAYIQLADLDLAEFDIKKALEIDPNNRDVKLEYKTLKEKVKEYNKKDAKFYGNMFNKMIDSNKSAPKDAQPMSIDSKA* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00223 572 PANTHER PEPTIDYLPROLYL ISOMERASE 36 151 - -
Rops4g00223 572 ProSiteProfiles TPR repeat profile. 487 520 IPR019734 GO:0005515
Rops4g00223 572 SMART tpr_5 487 520 IPR019734 GO:0005515
Rops4g00223 572 SMART tpr_5 453 486 IPR019734 GO:0005515
Rops4g00223 572 SMART tpr_5 404 437 IPR019734 GO:0005515
Rops4g00223 572 MobiDBLite consensus disorder prediction 1 27 - -
Rops4g00223 572 Gene3D - 33 151 IPR046357 GO:0003755
Rops4g00223 572 FunFam Peptidylprolyl isomerase 34 152 - -
Rops4g00223 572 FunFam Peptidylprolyl isomerase 267 389 - -
Rops4g00223 572 SUPERFAMILY FKBP-like 153 268 - -
Rops4g00223 572 SUPERFAMILY TPR-like 392 551 IPR011990 GO:0005515
Rops4g00223 572 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 172 263 IPR001179 GO:0003755
Rops4g00223 572 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 57 146 IPR001179 GO:0003755
Rops4g00223 572 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 288 384 IPR001179 GO:0003755
Rops4g00223 572 SUPERFAMILY FKBP-like 270 404 - -
Rops4g00223 572 Gene3D - 152 266 IPR046357 GO:0003755
Rops4g00223 572 SUPERFAMILY FKBP-like 36 154 - -
Rops4g00223 572 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 294 387 IPR001179 GO:0003755
Rops4g00223 572 FunFam Peptidylprolyl isomerase 392 547 - -
Rops4g00223 572 FunFam Peptidylprolyl isomerase 153 266 - -
Rops4g00223 572 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 177 266 IPR001179 GO:0003755
Rops4g00223 572 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 61 149 IPR001179 GO:0003755
Rops4g00223 572 Gene3D Tetratricopeptide repeat domain 390 547 IPR011990 GO:0005515
Rops4g00223 572 Coils Coil 520 540 - -
Rops4g00223 572 Gene3D - 267 388 IPR046357 GO:0003755
Rops4g00223 572 Pfam Tetratricopeptide repeat 487 520 IPR001440 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00223 Rops-Chr4 7226071 7231718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00223 1 552 Calmodulin-binding Proteins AT3G25230 80.978 0.0 895
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00223 K09571 - gmx:100794411 1004.97