Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00220 ATGATTCGTCGTCGAAGGTTCCCTATACAGGTGGAAGTAGAAAATGATCTTGATGGGGGACATGGAAAGTTGCCAAAAGCTTTTTGTTTTGAATTTGCCCCAACATTAGGTTCATCCGCTAAAATTATTACATCTTCTGGAGATGTATTTGATGTTCAGTTCAGGCAAACAGTGTTTGGAGGCTTATTCACAAAGGGTTGGATGCAGTTGCTTAATGAATTCAACATATCCAATAACCTTCGTGTTATTTTGAAATACCATGGTGAATCATGGTTCAGAATATACAAGGATGACCAGGAAAATCATCCCAATCTAATTCAACCCCCATATATGTATGAAATTAATCTGACTGATTACTCTATTTCTTCTCAGCAGGTTCTTCCTTTTCAATTTGTACGTGAAGGCCTGAATCTTAGGCGCAAAACGATTACTATCAAGGTGCAAGATGGAAGGTCCTGGATTTGTGGATTGTACCATCCAGAAAGACACAACAACGAAGCTAGGATCAATACGGGCTGGAAGAAATTTACAAAAGATTTGAATCTGAAGCCTTCAAACAGTCTACACTTTGAAGTGCTGGATCGAAAAAAAATTTTACTTCAGGCTCATATATCATGA 618 0.3803 MIRRRRFPIQVEVENDLDGGHGKLPKAFCFEFAPTLGSSAKIITSSGDVFDVQFRQTVFGGLFTKGWMQLLNEFNISNNLRVILKYHGESWFRIYKDDQENHPNLIQPPYMYEINLTDYSISSQQVLPFQFVREGLNLRRKTITIKVQDGRSWICGLYHPERHNNEARINTGWKKFTKDLNLKPSNSLHFEVLDRKKILLQAHIS* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00220 205 Gene3D - 96 205 IPR015300 -
Rops4g00220 205 SUPERFAMILY DNA-binding pseudobarrel domain 110 197 IPR015300 -
Rops4g00220 205 CDD B3_DNA 117 204 IPR003340 GO:0003677
Rops4g00220 205 SUPERFAMILY DNA-binding pseudobarrel domain 16 96 IPR015300 -
Rops4g00220 205 ProSiteProfiles B3 DNA-binding domain profile. 110 205 IPR003340 GO:0003677
Rops4g00220 205 Pfam B3 DNA binding domain 119 196 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00220 Rops-Chr4 7157085 7157892 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops4g00220 B3 3.7e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00220 - K11847 twl:120014324 52.373