Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00194 ATGGCACTATGCCTCACAGATAAGAAAATTTTATGGCTGTTGCCGAGAGCAACAGCAGCAGTGAACCTTCCACTTCATACAATTTGTTATAAAGTAGCAAGCTTGACTCAAGCTATATTAGACACAAAGCAAACTTCTAATTTGAAAGATCGATACTTTCTTGGGGAGCAGTTGGGTTGGGGACAGTTTGGTGTCATAAGAGCATGCTCTGACAAATTGACCGGAGAGGTTTTGGCCTGCAAATCAATTGCTAAAGATAGGTTGGTTACTTCAGATGATGTGCAGAGTGTTAAACTTGAGATTGAGATAATGGCTAAGTTATCCGGGCACCCAAATATTGTAGATCTCAAGGCAGTTTATGAAGAGGAGGATTTTGTTCATTTGGTGATGGAGCTTTGTGCTGGTGGGGAGTTGTTTCACTATCCTCCTCATCTCCAATTAAATTGGCAGACTTTGGGCTTGCAACCTACATCAAGCCTGGACCGAGTTTGCATGGGGGTTATTCTTTACATTCTACTGAGTGGGATGCCTCCATTTTGGGGAAGGACAAAATCACGGATATTCGAAGCTGTTAAGGCTGCAGACTTGAGGTTCCCATCTGAACTGTGGGATCACATTTCTGAATCTGCTATGGATTTGATTAGGGGAATGCTCTGCATAAAACCTTCTCAAAGGCTCACTGCCCGGGAGGTTTTGGATCATTGCTGGATGGAAAGCAATCAAACAATTCCTGAACAACTAAGCGAGCATAAAATCGGAAGTTGTGGAGAGTGGGATGTTGGTAGCAACTCATTCTCTGCCTCATTTATGTCCAGGAATCAAGACATCAGCTTTGCCATGAAACTACTGATTCCACGTGAGGAGTTTACTCATGGACCAGTTTTGAAGCAAACCATTATGGTTGCATGTTTAGGTGTGGTGCCCATTATGGATGAAGTAAGTGGTGTTGGTAGTTGTGGGTGA 963 0.432 MALCLTDKKILWLLPRATAAVNLPLHTICYKVASLTQAILDTKQTSNLKDRYFLGEQLGWGQFGVIRACSDKLTGEVLACKSIAKDRLVTSDDVQSVKLEIEIMAKLSGHPNIVDLKAVYEEEDFVHLVMELCAGGELFHYPPHLQLNWQTLGLQPTSSLDRVCMGVILYILLSGMPPFWGRTKSRIFEAVKAADLRFPSELWDHISESAMDLIRGMLCIKPSQRLTAREVLDHCWMESNQTIPEQLSEHKIGSCGEWDVGSNSFSASFMSRNQDISFAMKLLIPREEFTHGPVLKQTIMVACLGVVPIMDEVSGVGSCG* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00194 320 ProSitePatterns Protein kinases ATP-binding region signature. 58 85 IPR017441 GO:0005524
Rops4g00194 320 Gene3D Phosphorylase Kinase; domain 1 54 141 - -
Rops4g00194 320 Gene3D Transferase(Phosphotransferase) domain 1 158 237 - -
Rops4g00194 320 FunFam Calcium-dependent protein kinase 1 54 137 - -
Rops4g00194 320 Pfam Protein kinase domain 157 237 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g00194 320 Pfam Protein kinase domain 55 141 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g00194 320 SUPERFAMILY Protein kinase-like (PK-like) 49 251 IPR011009 -
Rops4g00194 320 ProSiteProfiles Protein kinase domain profile. 52 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g00194 320 PANTHER SERINE/THREONINE-PROTEIN KINASE 160 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00194 Rops-Chr4 6276547 6285317 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00194 166 246 EF-hand Containing Proteins AT3G10660 53.086 1.63e-20 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Rops4g00194 Pkinase 2.5e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00194 - - pvu:PHAVU_004G122500g 375.17