Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00184 ATGCAAGTGATTGATAAGGAGGATGATGGTGGCATTGTTAAATGGACTTTTGATTATGAGAAGCTCAATAAGGATATTGCACCTCCATATCGCTACTTGGACGTTTTCATCGAGGCACCTCCAAGGGGAACATCACGGCAATCAGGGAAGATAGTTCAGTGCTTTGAGCCTGCAACTATGAAATACTTGGGATATGTCCCTACATCGACACATCATGAGGTGTTCTTTTGGTGCTGTAATATAATGTATGAGATGCTTGTTGGTTGTCCCCCATTTTACTCTGATGATCCTTTAACAACATGCAGAAAGGTTCTAGTGGAACCACGGAAGAAAGGCAGGGCTGGAAGAGAAGAAGGAGGTGGAGGCTATGTTCAGCGCAGGAGGCTTGAGGAAGGTGAGGAGATTACATACTATTGTACCCACTTCCCGGAGGGTTACTCTGAATCGGATATGTGGAAAGTCTTCGTGAAGCTGGGACGGGTCACTGAAGTCTTTATTCCGTACAAGAGAAATAAGAGAGGTTGGAAGTTTGGGTTCGTTAGATTCTTGAAGCAAACAATGAAAGTTGGCTTCGAAGCTAGATTGATGAATATATGGTTGGGTTCTCTCAAGCTGTGGGTGAATGAATCTCGGTTTAGTAGAGCCACACCAATGGATAAATCGTCAAAGAGGCTACCACTGGAGAATGGAGGCGCGGTGATGAAGGGGCTGAAGTTCTCTGAGGTGGCTAACGGAACTTCCAAGATGAAGTGGCAGCAGATCAAGGAAATGTCTACGATGAAACCGCATAATGAAGAATGGGCAGTGGGGAGTGGTGACTTGAACGTGGGAAGCACACTAGTGGGATGCAACTTTAATGGATCGCACGAGAATTTTATATTGGGTATGCATGGCGATTATCCAATCGTGGGTCCAGATTGTGCTGGGGAAGGCGTGGGAGGTGGGTCTGCTATTGTTGCTCCAGTAATTCATACTCAAAATGGGCCACAACGGACTGGGCCATTAGTTTCTGACTGGTTGGTGTTGAAGCCCATGCATGATGTTAAGACTGTAGCCCATGAAGTGCAACGTGGTACAATACACAACGCCCGAAGTAATATAGACGCTGGCTTGGAAATGTTTAAGTGTAAAGAAGTGGTCATGAGTCCATTGAATTATGCAAATGTCACGGAAGTGGGGTCGGGTTCTAAAGCTTCTAATCTTGCCCGATCTTATGTGCCCGAGAGTGATGCTCACACACAGTCAATGGAGAACGCACCTAGGGCAGCACTCTCCCATAAGAGTAAGGCCCCTTTGGCGACGTTAAATCGTTTGGTCTTAAGGAAACAGGTCCTTGTAAATCGTAAACAGAGGAAATTTGCTGTAAAGCCTGTCAATAATGGAGGGAATACTTCAAAGAACAAAAGGCGTGGCAGGAAGAACAAGGCTATTACAAAGGGGGAGGCAGGAAGTTTGTGA 1458 0.4582 MQVIDKEDDGGIVKWTFDYEKLNKDIAPPYRYLDVFIEAPPRGTSRQSGKIVQCFEPATMKYLGYVPTSTHHEVFFWCCNIMYEMLVGCPPFYSDDPLTTCRKVLVEPRKKGRAGREEGGGGYVQRRRLEEGEEITYYCTHFPEGYSESDMWKVFVKLGRVTEVFIPYKRNKRGWKFGFVRFLKQTMKVGFEARLMNIWLGSLKLWVNESRFSRATPMDKSSKRLPLENGGAVMKGLKFSEVANGTSKMKWQQIKEMSTMKPHNEEWAVGSGDLNVGSTLVGCNFNGSHENFILGMHGDYPIVGPDCAGEGVGGGSAIVAPVIHTQNGPQRTGPLVSDWLVLKPMHDVKTVAHEVQRGTIHNARSNIDAGLEMFKCKEVVMSPLNYANVTEVGSGSKASNLARSYVPESDAHTQSMENAPRAALSHKSKAPLATLNRLVLRKQVLVNRKQRKFAVKPVNNGGNTSKNKRRGRKNKAITKGEAGSL* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00184 485 SUPERFAMILY Bet v1-like 1 38 - -
Rops4g00184 485 CDD RRM_SF 138 182 - -
Rops4g00184 485 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 138 184 IPR000504 GO:0003723
Rops4g00184 485 MobiDBLite consensus disorder prediction 406 428 - -
Rops4g00184 485 MobiDBLite consensus disorder prediction 406 421 - -
Rops4g00184 485 MobiDBLite consensus disorder prediction 451 485 - -
Rops4g00184 485 SUPERFAMILY RNA-binding domain, RBD 127 208 IPR035979 GO:0003676
Rops4g00184 485 Gene3D - 1 39 IPR023393 -
Rops4g00184 485 Pfam Pathogenesis-related protein Bet v 1 family 1 36 IPR000916 GO:0006952
Rops4g00184 485 Gene3D - 99 187 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00184 Rops-Chr4 5988811 5994705 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00184 36 74 Aldehyde Dehydrogenase Gene Family AT3G66658 66.667 4.01e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00184 - - ccaj:109814533 83.9593