Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00172 ATGCTACCCAGCTGCATGGCATTTTTGAGACCGCAAGTTTTGGAGGTTGATGGAAAGATCCCACCAAAAGTAAGTGGTGAATTCCACTCAAAAGATGAGTTGGTCAAGAAGTATTTCAAAGCAAGCAACTATGGAATGATGAAGACCCCTCCTCCTATTCAAGTGGCAGCAATTCCATTAGGGTTGCAGCAACGTGATGTTATTGGAGTTGCCAAAACCGGTTCTGGAAAAACCGATGCATTTGTTCTTCCCACGTTGAGTTACATCACCAAGCTTCCTCGCATAAGTGGGGAGAATGAAGCTGAAGGTCCTCATGCCGTTGTCATGGCACCAATTCGTGAACTTGCTCAACAAATTGAAGATGAGACTGTCAAGTTTGCATCTCGGCATCAAGAATATTTGGTGAAGACTCTGACTGAGCGAGAATGCTCTTGCATTACCACTGTGGAGCAGGGAATGGTACGTAATGTAAAATTAGCATGTGTGGCCCTTGACCAAAACAATGAGCCCAAGAGACCATCATACAGGCCCTCACATAATGGACCCACGTGGTACGTAGAAGTGGTCACAGATGAAACACCACAGCATGGGCCATCAAGCAAGGAAGCATGGGGCAGCGACAAACTGATTTCGGTTACACGCGAATTCCTTTATCTGGAGGTGTTTTTGGAGGAGACCAAGGAGATTTGTCTGGGGACCATTTGA 705 0.461 MLPSCMAFLRPQVLEVDGKIPPKVSGEFHSKDELVKKYFKASNYGMMKTPPPIQVAAIPLGLQQRDVIGVAKTGSGKTDAFVLPTLSYITKLPRISGENEAEGPHAVVMAPIRELAQQIEDETVKFASRHQEYLVKTLTERECSCITTVEQGMVRNVKLACVALDQNNEPKRPSYRPSHNGPTWYVEVVTDETPQHGPSSKEAWGSDKLISVTREFLYLEVFLEETKEICLGTI* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00172 234 Pfam DEAD/DEAH box helicase 52 142 IPR011545 GO:0003676|GO:0005524
Rops4g00172 234 PANTHER RNA HELICASE 29 145 - -
Rops4g00172 234 Gene3D - 10 174 IPR027417 -
Rops4g00172 234 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 58 150 IPR014001 -
Rops4g00172 234 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 27 130 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00172 Rops-Chr4 5571145 5572551 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00172 50 128 Eukaryotic Initiation Factors Gene Family AT5G11200 40.000 2.12e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00172 K12858 - ini:109176005 139.043