Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00163 ATGGATGCGAAGGATATACTTGGATTACCCAAAAACTCATTCCCAGCCGTAGAGAAAAAATCTCGACCTCCCAAAGAATCTCAGAGAAAACCAGATGGCATTTCGCGCGAGATTACTTGCCAATGGCTTCCTTTCACCAATTCTGCTCGTAAAGATAATCTTCACCTTTACCACTGGGTTCGAGTTGTCAATGGTGTTCCACCTACGGGGGACTATTCTTTTGCCAAGTATAATAAGTCTGTTGACATCATCAAATACACGGATGAGGAGTATGACAAGTATTTGACAGATCCTATGTGGACCAAAGAGGAGACAGATGAACTATTTGACTTGTGCGAGAAGTTCGATCTCCGATTTGTTGTAATAGCTGACAGGTTCCCATCATCTCGGACTGTAGAGGAATTAAAGGATAGATATTATAGTGTATCGCGGGCTATATTAATTGCTAGGGCTCCATCTTCTGGGGACGTTGCAACACATCCTCTCATAAAGGAACCATATAATGTTTCACAAGAAATGGAGCGAAAACGAGCACTGTCCATGGTCCTCTCTCAAACAAGGCAACAAGAGCGAAGGGATGAAGAGGTTCTCATTGAAGCAAAAAGAATAGCTGAGTTACGCATGCCTTCTAAGGTTGCCGAAGAGTCTCAGTTGGTTGTTGCTTCAAATGCTGGTGCAGAAGGTACAGAGAGGGCTGTCCCCGGTGAAAATGTTTCTCCATTGAACGTGCAACTTCAATCAATGGTTGTGCCTTCCACATTAACGGATAATGCATCTACTCTAGCTTCTCTTCGCATGCTTCGTGTATATCTGAGAACATATGGACTTGAGCAAATGGTGCAAGCTGCAAACTCATCTGCTGGACTTCGGACTATCAAACGAGTTGAGCAAACTTTGCAAGATCTTGGGGTCAGTTTGAAACCAAGGGTTCCAACAAAAGCTGTTTGTGCAGAGCATCTTGAACTAAGAAAAGAAATACTAACTTGGCTGAATCTCCAGAAACAGGTGCAATATAAAGAGGCTGAAGGCTCATCTTATCGTGATGGTTCATACGGTGAAACACCAGGCAATATGTGCTTGTATGCACCCAAGAAAGGCTTGATCAGAATTTCTCCTTGCTCAGACTTTGCTCATCACCAAATGTTAGGAAAAGTTCACGTAAGAGCGTGTGATGCGAAGACTAAGAGAGAACTTCAGGTGCAGTGCAGGCACGAGGGGTACTCTATATTTCTTGCGGAGGTGCCACTCAATCCCAAGGCCAACAAAGAGAAGATGACCCAAGTTATGTTCGAGACTTTCAAATGTGCCGACCATGTTGTTGCACCTTGGGATCAAAAGACCAGGTTGGATGCATGGCTATGTAGATTCGCGGGTAAGCTTAACGAGAGATATCACCATCAAGTTGTTCGTATAATATTGTTGTTGTCACAGGTCAGTAGTGACGTGGGAAGCACTGTTTGGGAAGCTACGATAGCATGGGCAAGGAGGCATGGGGCAGCAACGAAAAGTGATTGA 1515 0.4422 MDAKDILGLPKNSFPAVEKKSRPPKESQRKPDGISREITCQWLPFTNSARKDNLHLYHWVRVVNGVPPTGDYSFAKYNKSVDIIKYTDEEYDKYLTDPMWTKEETDELFDLCEKFDLRFVVIADRFPSSRTVEELKDRYYSVSRAILIARAPSSGDVATHPLIKEPYNVSQEMERKRALSMVLSQTRQQERRDEEVLIEAKRIAELRMPSKVAEESQLVVASNAGAEGTERAVPGENVSPLNVQLQSMVVPSTLTDNASTLASLRMLRVYLRTYGLEQMVQAANSSAGLRTIKRVEQTLQDLGVSLKPRVPTKAVCAEHLELRKEILTWLNLQKQVQYKEAEGSSYRDGSYGETPGNMCLYAPKKGLIRISPCSDFAHHQMLGKVHVRACDAKTKRELQVQCRHEGYSIFLAEVPLNPKANKEKMTQVMFETFKCADHVVAPWDQKTRLDAWLCRFAGKLNERYHHQVVRIILLLSQVSSDVGSTVWEATIAWARRHGAATKSD* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00163 504 Gene3D - 69 155 - -
Rops4g00163 504 Pfam SANT/Myb-like domain of DAMP1 72 146 IPR032563 -
Rops4g00163 504 MobiDBLite consensus disorder prediction 1 33 - -
Rops4g00163 504 PANTHER DNA METHYLTRANSFERASE 1-ASSOCIATED PROTEIN 1 FAMILY MEMBER 40 351 IPR027109 GO:0006281|GO:0006338|GO:0035267|GO:0043967|GO:0043968
Rops4g00163 504 SUPERFAMILY Homeodomain-like 96 145 IPR009057 -
Rops4g00163 504 Gene3D - 390 464 - -
Rops4g00163 504 FunFam DNA methyltransferase 1-associated protein 1 68 155 - -
Rops4g00163 504 CDD SANT_DMAP1_like 100 142 - -
Rops4g00163 504 SMART sant 96 145 IPR001005 -
Rops4g00163 504 SUPERFAMILY Actin-like ATPase domain 400 438 IPR043129 -
Rops4g00163 504 MobiDBLite consensus disorder prediction 18 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00163 Rops-Chr4 5213233 5215100 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00163 405 441 Miscellaneous Gene Families AT3G53750 62.162 2.96e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Rops4g00163 SANT_DAMP1_like 1.7e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00163 K11324 - gmx:100818926 618.231