Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00156 ATGTTCTCTCTCTCTCTCTCTCTCACGAACCCTAACTCTCATACCCAGAAGAAGGACGCCATCACTTTTGTTCCATCTCACCGCCACCGCTCCCCACTAGCTGCCGAGGTTTTGTCCAAAGAGAACATTGTGGAACCTATGCGAGATATTAGGAGAGCTCTTTTAGAAGTTGATGTTAGTCTTCCTGTTGTCAAAAGGTTTGTGCAATCTGTCAGTGATCAGGCTGTGGGTATTGGAGTCATTCGAGGAGTGAGACCAGATCAGCAATTGGTTAAGAATGTGCCATTGCAACTACTAAATCTTGTTGAACTTAATCTTTGTTTGCCAAGAAGACTCACTATACCACTTGTGAGTGAGGAGAAATGGTCAAAACCATATGCTGTTATATCTGTCACATTAGCACCAGTTTTGTTTGCAGCTCTTTGTAATACCCAGATGGAAAATGGGAGTTCAAAGAGTAGTCTAGTTGCATATTTGACAGCTGCTTTAATTGGCATTGTTTTGGGGAATATGGCATGTGTGACTACTAAGAGTACTAGCCCACCAAGAACATGCTTGTTTCCTTGGCTAGCAGGGGGCCTTTCTATGAGTGTAACATGGACTTATATTATTGCTGAGGAACTAGTTTCTCTCTTGGTTTCTTTTGGAACTATCATAGGGGTAAGTCCTTCAATCCTTGGATTAACTGTCCTAGCTTGGGGTAATTCTCTAGGGGATTTGATAGCCAATGGTGCAATGGCCAAGAATGGTGGAGCAGATGGAGCCCAAATAGCTATCTCTGGTTGTTATGCAGGTCCTATGTTTAATACTTTGATGGGTTTGGGCTTGCCTCTTGCTCTCTCAGCTTGGTCTGAATATCCTGACTCTTATGTCATTCCCAAGGACAATTCCCTTTTAGGAACACTTTTGTTCTTGATGGGAGGGGTGCTTTGGGCCCTTGTGATTTTGATGAAGAAGAATATGAGGCTTGATAAGTCCTTGGGGGTTGGGCTCTTGAACATTTTCCTCTGCTTTTTCTGTGCTGGAGGAACCCAAAGGTCTGAATCTTCATCTCCTAGGAGTCCATCGACCCCATCCAGTGCAAGTGCTATTGCAGCTAACGGAAGGACTTTTGCTCTAGAACTTGAAGCCTTAAGAATAGCCAGGTGA 1149 0.4386 MFSLSLSLTNPNSHTQKKDAITFVPSHRHRSPLAAEVLSKENIVEPMRDIRRALLEVDVSLPVVKRFVQSVSDQAVGIGVIRGVRPDQQLVKNVPLQLLNLVELNLCLPRRLTIPLVSEEKWSKPYAVISVTLAPVLFAALCNTQMENGSSKSSLVAYLTAALIGIVLGNMACVTTKSTSPPRTCLFPWLAGGLSMSVTWTYIIAEELVSLLVSFGTIIGVSPSILGLTVLAWGNSLGDLIANGAMAKNGGADGAQIAISGCYAGPMFNTLMGLGLPLALSAWSEYPDSYVIPKDNSLLGTLLFLMGGVLWALVILMKKNMRLDKSLGVGLLNIFLCFFCAGGTQRSESSSPRSPSTPSSASAIAANGRTFALELEALRIAR* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00156 382 PANTHER NA+/CA2+ K+ INDEPENDENT EXCHANGER 96 341 - -
Rops4g00156 382 Pfam Sodium/calcium exchanger protein 190 339 IPR004837 GO:0016020|GO:0055085
Rops4g00156 382 Gene3D - 29 104 IPR042101 -
Rops4g00156 382 Pfam SRP54-type protein, helical bundle domain 36 92 IPR013822 GO:0005525|GO:0006614
Rops4g00156 382 SMART SRP54_N_2 17 102 IPR013822 GO:0005525|GO:0006614
Rops4g00156 382 Gene3D - 126 342 IPR044880 -
Rops4g00156 382 SUPERFAMILY Domain of the SRP/SRP receptor G-proteins 36 103 IPR036225 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00156 Rops-Chr4 5095351 5106396 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00156 98 338 Antiporters AT5G17860 60.166 2.14e-94 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00156 K13754 - gmx:100818583 424.091