Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00131 ATGGAGAGGAGAAATAGAGGTTCTTATGCATGTCCCTTGTGCAGAAGGCAAAGGAGAAGATGTGATGGGAGTTGTGAGTTTGGTCAGTACTTTCCAGCCCACAGATCTGATGATTTTGATAATGCTCTTAGGCTCTTTGGTTTGAGCAACATAATGAAATTCATGCGAGATGTTGAGGTACATCAAAGACAAGATACTGCAAATTCCATTCTTGCTGAGGGTACTGCTTGGAGAAATCACCCTGTTCGTGGTGTTCTTGGTTATGAATTGATTCTCAATTCCCAAATAAGTTCTTCTTTGAAGGAACTAGAAGTTACAAATCAGCTTCTTGCATTTTGTAAAGATCAAGCAATACAAGCAAATCAAAATATGCAAATGGATAATTCTCTATTTTCTAGTTCCATACCATCACAAAGTAACCAAATTGATGGTTCTCTCACACAAATGCCAAGCTTGGCTGAAACGCCTACTGGATGCATAAGTGGCATAAACCTCATGGAACCTTACAAGTTGAAGGCATTATCAAGTACTCATGAAAAAGGAGAATCGAGCACTGTTGCATCCAAGGAGGAAACAATTGTTGAAGAGAAAAATTCAAAAGCCAGTGATGAGGGGGAGAACATTACTTCAGAGGAAGATAAAGAAGCAAAAGACTAA 657 0.3896 MERRNRGSYACPLCRRQRRRCDGSCEFGQYFPAHRSDDFDNALRLFGLSNIMKFMRDVEVHQRQDTANSILAEGTAWRNHPVRGVLGYELILNSQISSSLKELEVTNQLLAFCKDQAIQANQNMQMDNSLFSSSIPSQSNQIDGSLTQMPSLAETPTGCISGINLMEPYKLKALSSTHEKGESSTVASKEETIVEEKNSKASDEGENITSEEDKEAKD* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00131 218 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
Rops4g00131 218 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 10 143 - -
Rops4g00131 218 MobiDBLite consensus disorder prediction 175 218 - -
Rops4g00131 218 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00131 Rops-Chr4 4346404 4347501 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00131 1 96 AS2 family AT2G19820 42.268 2.59e-20 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Rops4g00131 LOB 1.1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00131 - - cam:101506682 183.341