Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00108 ATGGCATTTCAATCTTCTGGATACTTGCATGAAATGGCTGTTCCAAAAGTGAATGAAAAGTTGCTTGAAGACCTTGAAGTAATGGGATTTCCACGGGCACGGGCAACTAGAGCACTTCATTATTCTGGCAATACCAATATAGAGGATGCTACAACTTGGCTGATTGATCATGAGAATGACACTGATATTGATGAGATGCCATTGGTAGATGTAGACATTAATATTGAGAGTTCGGAATCATTCCCTACCACAGAAGAAATGAGAATGAAAGCACAGAAATTAAGGGATCAAGAGCGTAAGAGGAAAGAGAATGAAGAAAAAATAATGGAGAGAGAAAGGGAGAAGGAGAGGATTCAAGCAGGTAAGAAACTCCTTGAGGCAAAGCGAATTGCTGAAGAAAATGAAAGAAAAGGGAATTTATCCTTGAGAAAAGCAGAAAAAGAAGAAGAGAAAAGAGTTAGGGAAATTGTTCTCCGAAAACTAGAGCAGGATAAGTTAAATAGAAGGTCTCAACTTGGATTGCCTTTAGAAGGCCAAACAACTACTAGATCATCCTCCATTGCAATCAAGCAAGAAAAGAATTCGACACCTGTTTATACAACTGCAAAAGTTGAGCACTTGAGAGAATGTCTGAGGTCTCTCAAGCGTAACCACCAGGGTGAGCATGCCAGAGTCAGAAGGGCCTTTGAAACACTGCTAGTGTATGTTGGAAATGTTGCCAAGAATCCCAAGGAGGAAAAGTATAGGAAGATCCGACTGACCAACCCGGTATTCCAGGATAGAGTTGGAAGTTTAAATGGAGGTGTAGAGTTGCTCGAGCTCTGTGGTTTTGAGAGAAGGGGTGACTTCTTGTATCTTCCTCATGAAAAGGTTGATATGGAAATGCTAAATTCAGCTGGTTTTGTCTTAAATTCTGCAATGACAAATCCTTTCTTTGGATTGCTCAGTACTTAA 954 0.4025 MAFQSSGYLHEMAVPKVNEKLLEDLEVMGFPRARATRALHYSGNTNIEDATTWLIDHENDTDIDEMPLVDVDINIESSESFPTTEEMRMKAQKLRDQERKRKENEEKIMEREREKERIQAGKKLLEAKRIAEENERKGNLSLRKAEKEEEKRVREIVLRKLEQDKLNRRSQLGLPLEGQTTTRSSSIAIKQEKNSTPVYTTAKVEHLRECLRSLKRNHQGEHARVRRAFETLLVYVGNVAKNPKEEKYRKIRLTNPVFQDRVGSLNGGVELLELCGFERRGDFLYLPHEKVDMEMLNSAGFVLNSAMTNPFFGLLST* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00108 317 SMART PGNneu 227 288 - -
Rops4g00108 317 SUPERFAMILY UBA-like 9 68 IPR009060 GO:0005515
Rops4g00108 317 Coils Coil 87 119 - -
Rops4g00108 317 MobiDBLite consensus disorder prediction 81 114 - -
Rops4g00108 317 Gene3D - 204 305 - -
Rops4g00108 317 Coils Coil 130 164 - -
Rops4g00108 317 CDD UBA_PUB_plant 17 64 - -
Rops4g00108 317 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 16 57 IPR015940 -
Rops4g00108 317 Gene3D - 3 70 - -
Rops4g00108 317 SUPERFAMILY PUG domain-like 203 311 IPR036339 -
Rops4g00108 317 Pfam PUB domain 224 293 IPR018997 -
Rops4g00108 317 MobiDBLite consensus disorder prediction 86 114 - -
Rops4g00108 317 PANTHER F13M7.16 PROTEIN 7 315 - -
Rops4g00108 317 SMART uba_6 18 56 IPR015940 -
Rops4g00108 317 Pfam UBA/TS-N domain 18 54 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00108 Rops-Chr4 3538220 3554471 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00108 11 315 C2H2 Transcription Factor Family AT1G04850 58.900 3.19e-101 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00108 - K24348 gmx:100781260 466.463