Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00097 ATGGGTCTTCTTAGTAATACTAATTACTTGCTGATTGCTATGCTCTTGTTTTCATGGTTTTATTTGGGTTTGAGCTCAAAGAATGATACTATTACCTCAACAAGATTCATCAGAGACCATGAGATAATGAGCTCAAACAACAGTGACTTCAAGCTAGGATTCTTCAGCCCACAAAATTCAACAAATCGCTATCTAGCAATATGGTATCTCTCTGAATCCTACATTATATGGATTGCCAATAGAGATCAACCACTCAAGGATTCTTCTGGGGTTGTCAAGATTCATAAGGATGGCAATCTTGTGATAATGAATGGAGAAAATCATATCATATGGTCAACAAATTTGGCAACTACTCCTACCAATTCAAGTGCTCAGCTTGATGATTCAGGAAATCTTATCCTGAGAGATGTTATCAGTGGAGAATCAATATGGGACAGTTACACACATCCTTGTGATGCTGCAGTTCCAGGGATGAAAATTGCTGCCAACAGGGTTACAGGTGAGAAAATAGAGTATATATCATGGAGAAACAAATCTGATCCTTCTACTGGGTACTTCACAGGTAGTCTTGAACGTTTGGATGCTCCTGAAGTGTTTTTTTGGTATAATAAAACTCGTCCATATTGGAGAACTGGTCCTTGGAATGGAAGGGTCTTCCTTGGTTCACCAAGGATGTTAACTGAGTATCTATATGGATGGCGTTTAGATCATGATGGTGATACTGTTTATCTAACTTACAGTTTTGCAGCCCCATCTGCTTTTGGAATTCTCACCATGACTCCATATGGGACACTTAAATTGGTAGAGTTTATGAACAAAAAGGAAGTTATATCACTTGAGGTGGATCAAAATGAGTGTGATTTTTATGGTAAATGTGGGCCAAATGGAAACTGTGATGCTTTGAGCTCACCAATTTGCAGCTGTTTTGAGGGGTTTGAGCCTCAGAATTCAGAGGAATGGAATAGAAGAAATTGGACTAGTGGATGTGTGAGAAATGTACCATTGCAGTGTAACAAGTTGAAGAATGGAAGTCATGGAGAACCAGATGGGTTTTTGACATTTCATTATATGAAAGTGCCAGATTTTGCAGAGAGATCAGATGGTAACCAAGATAAATGTAGAACAGATTGCTTAGCTAATTGCTCTTGCTTGGCATATGCATATGATTCTTATATAGGTTGCATGTATTGGAGTGGAGACTTAATTGACTTGCAGAAATTTCCTTATGGAGGAGTTGATCTCTTCATTCGTGTGCCAGCAGAACTTGTTCAAGGTAAAAAGGGAAGGGATTACAAGGAATTAATCATTGCCATTACTGGGGCAATTGGAGCATTGACCTTAGCTGTCTGTGCTTATATTTGGTGGCAAAAGTGTACTGCTAAGCCTACAGCAAGTCAGCCTCAAAACTTGGTTATTGGAGACAAGAAACAAATGACACTGGATGAGCTACCACTATTTGATTTTGAAAAGCTTGCAACTGCTACAAACAACTTTCACTTGGCTAATATGCTTGGGAAGGGAGGTTTTGGTCCAGTATACAAGGGACAATTGGAAGATGGCCAAGAAATTGGTGTTAAAAGACTCTCCAAAGCATCTGGACAAGGAGTAGAAGAATTCATGAATGAAGTAGTGGTGATTTCTAAACTTCAACATCGCAATCTTGTAAGACTTCTTGGTTGTTGTATTGAACGAGATGAACAGATGCTGGTTTATGAGTTCATGCCAAATAAGAGTTTGGATGCATTTATCTTTGATCCACAACAAAAGAAAGTTTTAGATTGGAGAAAGCGCTTCAACATAATTGAAGGAATAGCTCGAGGTATACTTTATCTTCATAGAGACTCAAGACTAAGGATTATACATAGAGATCTTAAAGCAAGCAACATCTTATTGGATGAAAATATGAATCCAAAAATATCAGACTTCGGTTTAGCTAGAATTTTTAAAGGTGGAGAGGGTGATGAAGCTAACACAAGAAGGGTAGTCGGAACTTATGGTTATATGCCGCCTGAATATGCAATGGAGGGGCTCTTCTCTGAGAAATCAGATGTTTATAGCTTTGGAGTTTTGTTACTAGAGATTGTTAGTGGACGAAGAAACACTAGCTTTTATAACAATGCGGAAACTCTTAGCCTTGTAGGATTTGCATGGAAACTATGGAATGAAGAAAACATTTTATCCTTGATAGATCCAGAGATATGGGATCCATGCTTCGAAAGTAGCATGTTGAGATGCATACACATAGGACTTCTCTGTGTGCAAGAACTTACAAAAGAAAGACCAACTATATCCACTGTAGTTTTGATGCTCATAAGTGAGATCACCCATCTTCCTCCTCCAAGGCAAGTTGCATTTGTCCAGAAGCAAAATTTCCGAAGTGGAGAGTCTTCCCAAAAAAGTCAGTCCAATAATTCGAACAACAATGTGACTCTATCTGAAATACAAGGCAGGTAA 2454 0.3851 MGLLSNTNYLLIAMLLFSWFYLGLSSKNDTITSTRFIRDHEIMSSNNSDFKLGFFSPQNSTNRYLAIWYLSESYIIWIANRDQPLKDSSGVVKIHKDGNLVIMNGENHIIWSTNLATTPTNSSAQLDDSGNLILRDVISGESIWDSYTHPCDAAVPGMKIAANRVTGEKIEYISWRNKSDPSTGYFTGSLERLDAPEVFFWYNKTRPYWRTGPWNGRVFLGSPRMLTEYLYGWRLDHDGDTVYLTYSFAAPSAFGILTMTPYGTLKLVEFMNKKEVISLEVDQNECDFYGKCGPNGNCDALSSPICSCFEGFEPQNSEEWNRRNWTSGCVRNVPLQCNKLKNGSHGEPDGFLTFHYMKVPDFAERSDGNQDKCRTDCLANCSCLAYAYDSYIGCMYWSGDLIDLQKFPYGGVDLFIRVPAELVQGKKGRDYKELIIAITGAIGALTLAVCAYIWWQKCTAKPTASQPQNLVIGDKKQMTLDELPLFDFEKLATATNNFHLANMLGKGGFGPVYKGQLEDGQEIGVKRLSKASGQGVEEFMNEVVVISKLQHRNLVRLLGCCIERDEQMLVYEFMPNKSLDAFIFDPQQKKVLDWRKRFNIIEGIARGILYLHRDSRLRIIHRDLKASNILLDENMNPKISDFGLARIFKGGEGDEANTRRVVGTYGYMPPEYAMEGLFSEKSDVYSFGVLLLEIVSGRRNTSFYNNAETLSLVGFAWKLWNEENILSLIDPEIWDPCFESSMLRCIHIGLLCVQELTKERPTISTVVLMLISEITHLPPPRQVAFVQKQNFRSGESSQKSQSNNSNNNVTLSEIQGR* 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00097 817 SMART serkin_6 498 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g00097 817 CDD PAN_AP_plant 333 419 - -
Rops4g00097 817 Gene3D - 24 149 IPR036426 -
Rops4g00097 817 CDD STKc_IRAK 504 770 - -
Rops4g00097 817 SUPERFAMILY Protein kinase-like (PK-like) 482 788 IPR011009 -
Rops4g00097 817 PIRSF SRK 2 817 IPR024171 GO:0004674
Rops4g00097 817 SMART ntp_6 346 418 IPR003609 -
Rops4g00097 817 ProSiteProfiles EGF-like domain profile. 282 318 IPR000742 -
Rops4g00097 817 ProSiteProfiles PAN/Apple domain profile. 337 419 IPR003609 -
Rops4g00097 817 ProSiteProfiles Protein kinase domain profile. 498 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g00097 817 CDD B_lectin 34 150 IPR001480 -
Rops4g00097 817 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 24 147 - -
Rops4g00097 817 SUPERFAMILY alpha-D-mannose-specific plant lectins 65 216 IPR036426 -
Rops4g00097 817 Pfam D-mannose binding lectin 75 176 IPR001480 -
Rops4g00097 817 SMART blect_4 34 150 IPR001480 -
Rops4g00097 817 ProSiteProfiles Bulb-type lectin domain profile. 28 147 IPR001480 -
Rops4g00097 817 ProSitePatterns Serine/Threonine protein kinases active-site signature. 619 631 IPR008271 GO:0004672|GO:0006468
Rops4g00097 817 MobiDBLite consensus disorder prediction 793 817 - -
Rops4g00097 817 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 574 778 - -
Rops4g00097 817 Gene3D Transferase(Phosphotransferase) domain 1 574 777 - -
Rops4g00097 817 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 463 573 - -
Rops4g00097 817 Pfam PAN-like domain 347 404 IPR003609 -
Rops4g00097 817 Gene3D Phosphorylase Kinase; domain 1 472 573 - -
Rops4g00097 817 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 16 761 - -
Rops4g00097 817 Pfam Protein tyrosine and serine/threonine kinase 499 767 IPR001245 GO:0004672|GO:0006468
Rops4g00097 817 Pfam S-locus glycoprotein domain 209 316 IPR000858 GO:0048544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00097 Rops-Chr4 3110676 3115048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00097 434 785 Receptor kinase-like Gene Family AT4G23230 55.807 6.32e-124 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Rops4g00097 PK_Tyr_Ser-Thr 1.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00097 - - ccaj:109790907 1333.16