Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00095 ATGGAAGGTCGTCGGAGGATAACGCTTCACGACCGAATGACAGCTGGCGACACGGGTAGCCGTAACTCACTAGCTTGCTTGCTCCTCAACGACGTCGTTTTCCCCAACCAGAAGACAGAAGCCGAATCTGAAGCCGATGCGAGCCGCCAGCTGAGCCGAAGCCGAACTCTCTTAGACATTATTCGAGAAGACGAACCCAACAATAACAACACAAAGGATCGTAACAAGTCGTGGAAAAAAGCCTTCAAGGACAAACTTCGGCTCAAGCTTGCTAACGGCTCGGCTTCGACTTCCACTTCAACAGTTAATAATGATGATGATGATAACAATAACATAGCCTTACCTCAATCCTCGCGTCGCAACTCGGTCTCTGAGTCAACAGGGCCTGACTCGGACGAGTTGACTCAGCAAAGCATGACTCACCAACAGCAAAACGACGTCGTCGTAGATAATTCGGATCCGATCAGTGATCGGAGCTCGTCACCATTTCGCCCACCGGTCGCCGGCGGTGACTCCTCCGACGAGGCTGCGGCTGCGGGGATGGTGAACGTGTCGCTTATGGATTTGTTAGAGGAAATAGAAGAGGATTCGAATCGAATGAGCGATGATGATGATGGTGTTGATGAGTTTCAAGAAGAAGAACAAGAAGGAGAAGGAGAAGAAAGAGAACAAGAGAGAGGTGAAGAAGAAAGGTGTGTTGTAGAGTATAACTGCTGCGTGTGCATGGTGCGTCATAAAGGTGCGGCGTTTATACCCTGTGGCCACACGTTTTGCAGGATGTGTTCAAGGGAGCTTTGGGTGAACAGAGGTAATTGTCCTCTTTGCAATAATTTTATATTGGAAATTCTTGATATTTTCTGA 861 0.4855 MEGRRRITLHDRMTAGDTGSRNSLACLLLNDVVFPNQKTEAESEADASRQLSRSRTLLDIIREDEPNNNNTKDRNKSWKKAFKDKLRLKLANGSASTSTSTVNNDDDDNNNIALPQSSRRNSVSESTGPDSDELTQQSMTHQQQNDVVVDNSDPISDRSSSPFRPPVAGGDSSDEAAAAGMVNVSLMDLLEEIEEDSNRMSDDDDGVDEFQEEEQEGEGEEREQERGEEERCVVEYNCCVCMVRHKGAAFIPCGHTFCRMCSRELWVNRGNCPLCNNFILEILDIF* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00095 286 MobiDBLite consensus disorder prediction 92 174 - -
Rops4g00095 286 ProSiteProfiles Zinc finger RING-type profile. 238 276 IPR001841 -
Rops4g00095 286 SUPERFAMILY RING/U-box 237 282 - -
Rops4g00095 286 Coils Coil 210 230 - -
Rops4g00095 286 MobiDBLite consensus disorder prediction 59 79 - -
Rops4g00095 286 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 282 IPR013083 -
Rops4g00095 286 MobiDBLite consensus disorder prediction 92 159 - -
Rops4g00095 286 PANTHER OS01G0917900 PROTEIN 4 286 - -
Rops4g00095 286 MobiDBLite consensus disorder prediction 196 227 - -
Rops4g00095 286 CDD RING-HC 238 275 - -
Rops4g00095 286 SMART ring_2 238 275 IPR001841 -
Rops4g00095 286 MobiDBLite consensus disorder prediction 196 223 - -
Rops4g00095 286 Pfam Zinc finger, C3HC4 type (RING finger) 236 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00095 Rops-Chr4 3023479 3024819 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00095 4 286 C3H Transcription Factor Family AT3G25030 33.218 3.63e-36 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00095 - - gmx:100819018 241.506