Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00089 ATGCACTTAACAAGTGACAATTTAAAGTCAGTGAGCCCAAGTTTAGGGGCTGCTTTTAGCTATTATTGGGTGGATTCCCAAAATAACTTTTCCACACTAAAACCATTTCATCTTGTGTCATTCCATTTTTCAAAGGTACAAGAAATAAAAGTTGGCACTTCCAAAGCAATTAGGCCTTGGAGAACGACAAGTAGAGGTGTGGTTCCAAAACAGAAGAGCACGAAGGAGCACCGAGCCGTTGATTTGAATCAATCGATTCGATCTTTGTGGAACCAGTGCCTTCGATTCGTCTCGGATAAGGTAGAACAAGTTGTACCTGACAGCTTCTATTTACTTTCGTCTTTTCTATCTGTTTCAAGGCAATCAGTGGAATTGGAAAAGGAAGGTGTTGCTGCCGCTGCTGTGGTCAGTGCAGTTGCAGCATGCATTGTCTTTTACATGTATTATTACCAAAAGAAGAAGAAGAATCTTCACGCAATGTCCTCTATACTATTTCAGAGCTTCTCTTCTTGTCCATCTTTAGAAGACATGGAGAAGGGACGTAAATACCTTGGACTTGACTTCTTCACCTATAGTGAACTCGAAGAGGCCACAAACTACTTTGATTCAGCCAAAAGACTAGGAGATGGAGGCTTTGGGACAGTGTACTATGGCAAACTTCGGGATGGGCGTGTTGTTGTAGTGAAAAGGATGTCTGAGAACAGTTACAAGAGAGTAGAGCAATTCATGAATGAAGTTGAGATATTAACTGGCTTACACCACCAGAATCTTGTGTCATTATATGGATGCACTTCTCGCCACAGTCGTGAACTTCTGCTTGTATATGAATATGTTCCTAATGGAACTGTTGCTGATCACCTTCATGGTAAACTTGCAAAACCTGGCACACTGTCATGGCATATCGGAATGAATATTGCCATAGGAACTGCAAGTGCATTGGTATATCTTCATGCTACTGACATCATCCATAGAGATGTGAAAACCAACAACATTCTCCTTGACAATCACTTTGGTGTCAAAGTAGCAGATCTTGGACTTTCACGTCTTTTACCAAACCATGTAACTCACATTTCAACAGCTCCACAAGGGACTCCTGGTTATGTAGATCCAAAATACCATCAACACCACATCACAAATTATCAATTAAGGTGTCAGTTGCTCATTATGGAATCTAATGAGAAATTTTATTGGCAGGCTTTTAAAACAGTACTTGATTATCCTGTGCATTAA 1230 0.4041 MHLTSDNLKSVSPSLGAAFSYYWVDSQNNFSTLKPFHLVSFHFSKVQEIKVGTSKAIRPWRTTSRGVVPKQKSTKEHRAVDLNQSIRSLWNQCLRFVSDKVEQVVPDSFYLLSSFLSVSRQSVELEKEGVAAAAVVSAVAACIVFYMYYYQKKKKNLHAMSSILFQSFSSCPSLEDMEKGRKYLGLDFFTYSELEEATNYFDSAKRLGDGGFGTVYYGKLRDGRVVVVKRMSENSYKRVEQFMNEVEILTGLHHQNLVSLYGCTSRHSRELLLVYEYVPNGTVADHLHGKLAKPGTLSWHIGMNIAIGTASALVYLHATDIIHRDVKTNNILLDNHFGVKVADLGLSRLLPNHVTHISTAPQGTPGYVDPKYHQHHITNYQLRCQLLIMESNEKFYWQAFKTVLDYPVH* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00089 409 ProSitePatterns Serine/Threonine protein kinases active-site signature. 321 333 IPR008271 GO:0004672|GO:0006468
Rops4g00089 409 ProSitePatterns Protein kinases ATP-binding region signature. 207 229 IPR017441 GO:0005524
Rops4g00089 409 ProSiteProfiles Protein kinase domain profile. 201 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g00089 409 Pfam Protein kinase domain 203 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g00089 409 Gene3D Transferase(Phosphotransferase) domain 1 278 384 - -
Rops4g00089 409 Gene3D Phosphorylase Kinase; domain 1 174 277 - -
Rops4g00089 409 SUPERFAMILY Protein kinase-like (PK-like) 186 379 IPR011009 -
Rops4g00089 409 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 105 375 IPR044652 GO:0004672
Rops4g00089 409 SMART serkin_6 201 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00089 Rops-Chr4 2799687 2815165 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00089 173 379 Receptor kinase-like Gene Family AT1G25390 66.986 7.81e-94 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Rops4g00089 Pkinase 1.5e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00089 - - gmx:100794703 380.563