Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00088 ATGGCCACCCCTTCCTCTCCAAAACTCACAATTTCCCTACCCACAAACGACCCCGTTTCACTCACTAAGAAACCCCAACCAATCCCTTGGACCCACCAAGAGACTGTGAACCTCATAAGGGCATACCAAGAGAAGTGGTACTCCCTCAAGCGGGGCCCACTCCGTTCCAACCAGTGGGAAGAGGTGGCCGTCGTTGTCGCCGCTCGATGCGGCTACGACTTCAATCACCCCTCCAAGTCCGCCCTCCAATGCCGCCACAAGATGGAGAAGCTCCGCCAGCGCCACCGCGCTGAGAAGCACCGCCCCACCGCCACGTCACGTGCCTGGCAATACTTAAACCTCATGGACGAGCTCCAGCACGGCCCCATGCCTATCCCGGCTCGACCCCTGGCGTCTTTCGGTTACAACAACGACAATGATGATGAAGAAGATGATGAGCATGAATATGATCATGATGACTATGATGATAATTATATTAAATCAAGGAGTATTAATTATATTCTTAACCAGAGATCCACATCAACCAAGTATATAGGGTTTTCAAGGGAGCATGTTGGGGATGATGACAATGACAATGACAATGATGCCGATGATGATGATGATGATGATGATGATGATGATGATGAGGAAGGAGTGATGGTGAATGAGAAAGGGTTGGTTTCGGGGTTAACAGAAGAGATGAGAGTTTTTGCTGATAGGTTTGTTGGTTTGGAGAATTTGAAGATGGAGATGATGAAGGAAACTCAGAGGTTCAGGTTAGAGATGGAGAAGAAGCGGATCCAGATGATTCTGGAATCGCAGCGCAAGGTTGTTGATTCAATTGGGAGGGCATTTGGATCTTCTTCCAAGAGGATGAAGATTGGTCATCCAATTTGA 876 0.4852 MATPSSPKLTISLPTNDPVSLTKKPQPIPWTHQETVNLIRAYQEKWYSLKRGPLRSNQWEEVAVVVAARCGYDFNHPSKSALQCRHKMEKLRQRHRAEKHRPTATSRAWQYLNLMDELQHGPMPIPARPLASFGYNNDNDDEEDDEHEYDHDDYDDNYIKSRSINYILNQRSTSTKYIGFSREHVGDDDNDNDNDADDDDDDDDDDDDEEGVMVNEKGLVSGLTEEMRVFADRFVGLENLKMEMMKETQRFRLEMEKKRIQMILESQRKVVDSIGRAFGSSSKRMKIGHPI* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00088 291 MobiDBLite consensus disorder prediction 1 22 - -
Rops4g00088 291 MobiDBLite consensus disorder prediction 182 213 - -
Rops4g00088 291 FunFam Trihelix transcription factor ASIL2 30 97 - -
Rops4g00088 291 ProSiteProfiles Myb-like domain profile. 29 92 IPR001005 -
Rops4g00088 291 MobiDBLite consensus disorder prediction 190 212 - -
Rops4g00088 291 Gene3D - 30 97 - -
Rops4g00088 291 Pfam Myb/SANT-like DNA-binding domain 29 118 IPR044822 -
Rops4g00088 291 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 26 274 IPR044823 -
Rops4g00088 291 MobiDBLite consensus disorder prediction 137 152 - -
Rops4g00088 291 MobiDBLite consensus disorder prediction 123 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00088 Rops-Chr4 2796126 2797312 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00088 30 126 Trihelix Transcription Factor Family AT3G14180 29.293 3.47e-09 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Rops4g00088 Myb_DNA-bind_4 2.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00088 - - adu:107474774 309.301