Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00073 ATGTCTCTTCCAAGACCCACTGAGGATAAAGCCCCTCAGCAGCTGAAAGAAGCAGCAGCAACTTCATCCTCTTCTTCATTGAATAGGCTAAACACTCAAAGAAACACTTTCCCTCCTTTAACTCTACAGAACAAGAGAAGCAAACTTGAGGATAGCGATGAAGATATGTTCACAGTTCCAGACGTGGAAGCCACACCAAGTAGTGTTCATTCTGCAGTGACTCTTCCAAGTAGTGACCTCAATCAAAGTAACATGACAGTGACAGACCCTCAATTCCAAACTGACTTTCCCGGGAAACGCCGCCGGGGAAGGAACCCTGCAGACAAGGAGCATAGACGCATCAAGAGATTGTTGAGGAACAGAGTCTCTGCTCAAGAAGCTCGTGAAAGAAAGAAGGTTTATGTGAATGACTTGGAATCAAGGGCTAAAGAGTTGCAAGACAAAAATGGTATCTTAGAAGAGCGCATCTCAACTTTGATCAATGAGAACACCATGCTACGGAAGGTTCTAATGAATGCAAGGCCAAAAGTTGATGATAGCATTGAACAAAAGCAGGATCTGCAAAGTAAAAGCTAA 576 0.4375 MSLPRPTEDKAPQQLKEAAATSSSSSLNRLNTQRNTFPPLTLQNKRSKLEDSDEDMFTVPDVEATPSSVHSAVTLPSSDLNQSNMTVTDPQFQTDFPGKRRRGRNPADKEHRRIKRLLRNRVSAQEARERKKVYVNDLESRAKELQDKNGILEERISTLINENTMLRKVLMNARPKVDDSIEQKQDLQSKS* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00073 191 Coils Coil 128 162 - -
Rops4g00073 191 CDD bZIP_HY5-like 113 163 - -
Rops4g00073 191 Pfam bZIP transcription factor 109 168 IPR004827 GO:0003700|GO:0006355
Rops4g00073 191 FunFam Transcription factor HY5 131 172 - -
Rops4g00073 191 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 21 186 IPR044280 GO:0000981|GO:0045944
Rops4g00073 191 Gene3D Single helix bin 131 172 - -
Rops4g00073 191 SMART brlzneu 108 172 IPR004827 GO:0003700|GO:0006355
Rops4g00073 191 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 110 173 IPR004827 GO:0003700|GO:0006355
Rops4g00073 191 MobiDBLite consensus disorder prediction 1 110 - -
Rops4g00073 191 MobiDBLite consensus disorder prediction 64 93 - -
Rops4g00073 191 MobiDBLite consensus disorder prediction 16 45 - -
Rops4g00073 191 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 115 130 IPR004827 GO:0003700|GO:0006355
Rops4g00073 191 SUPERFAMILY Leucine zipper domain 112 171 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00073 Rops-Chr4 2381779 2384341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00073 98 180 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT3G17609 77.108 7.77e-40 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Rops4g00073 bZIP_1 2.3e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00073 K16241 - gmx:100783826 290.041