Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00071 ATGAAACATGGGAATGGGGCCAAAAAGTTTGGTTCACGAATGAACACGTTGATGTACACAGAACCGCCCCTTTCCTCACTCCACTCTCATGGAAGTTACACAAACGACAAATCTGCTTCTCAAGTGGTCCTTTCCCACTATGCTGACAGGAGGAGTCTGCTTTCCAATGTTTTGGTGCCTTTGACAAATTTGGCGAATGGCTTGTTAGAAGAAAAAGAGGAAGTAGGCATCAGTGTTGGTGACTTCATGGACTTGAGGGATGCATGGGCTAGCTGCCTTCTGTTTTGTAGTTTGTGGTTTGTCACTTTCTGTGGACAAGATGGTTTCTTGAGTCTTTCTTGTGGTGGAAGAACCAGTTTCAGTGATTCATCTAACATTTCATGGGTCCCAGATACCACCTACATAACCAGAGGCAAGACTACCACCATCACTTACAGTGATGGTTCCTCCTCATTGAATATCTCAGCTCGATTCTTCCCAAGTTCAAGAGGTCGCAAATGTTACAGAATACCAATCAACAATGCAACAACTTTGGTTCTTGTTAGAGCAAAATTTGTGTACAAGAACTATGATGGACTTGGGAAACCCCCTAGATTTTCTGTTTCAATTGGGACAGCTACTGCTGCTACAATAAATCTTGCAAAACATGATCCATGGAGTGAAGAGTTACTATGGAGAATCAATAAGGATACACTGCCATTCTGTTTAAATGCATTTCCAAATGGTGGTTCACCTGTAATATCTTCTCTTGAAATCCGACCACTTCCTCAAGGAGCCTACACATGTGGCATGGAAGATTTTCCAAATAAGTTGCTAAGGAAGAGTTATCGAATTGATTGTGGATACACCAATGGTTCTATCAGGTATCCCTTGGATCCATTTGATAGAATATGGGATGCTGATAGAAGTTTCACACCCTTCCATCTTGCAACTGGGTTCAAGATTCAGCTTAGCTTTAATCAGTTTAGTCTTGTGGAGGAACCACCAGCATCTGTTCTTCAAACTGGGAGAGTTTTGGTAAGAAGAAATATACTGACATATAACCTCCCTCTTGACACATTAGAGGACTACTACATCATCCTCTACTTTGCTGGAATTCTTCCTGTCTTCCCCTCATTTGATGTCATAATAAATGGCAATCTTGTAAAATCAAACTACACAATAAAGAGCTCAGAAATCAGTGCTTTATATGTAACACGAAAGGGAATCAGAGGCTTGAATATAACACTGAAGAGTATAAGTTTTTGCCCTCTGATCAATGCATTTGAGGTTTATAAGATGGTTGATATTCCACCTGATGCCTCCTCAACCACAGTTTCAGCATTGCAGGTTATTCAGCAGTCCACTGGATTGGATCTTGGATGGCAAGATGATCCATGCTCTCCTTCCCCGTGGGATAGAATTGATTGTGAAGGAAGCCTTGTTACAGCATTGGATCTTTCAGACATAAATTTGAGATCAATCAATCCTACACTCGGTGACCTATTAGACCTTAAAGCATTGGATTTGCACAATACATCGCTTTTGGGTGAAATACAAAATTTGGATAGCTTGCAACATCTTGTGAAATTGAACCTGAGTTTCAATCAATTGACATCCTTTGGTGTAGAGCTGGAGAACTTGATAAGCCTTCAAATATTAGACTTGCAGGACAATAGTCTAACCGGAGTAGTGCCCGATAGCTTGGGAGAGTTAGAGGACCTCCACTTTCTGAATCTGGAAAACAACAAACTACAAGGTCCGCTACCAGAGTCTTTGAATAAAGAAACGACAGAGATCAGAGCGTCTGGTAATTTGTGCCTTACCTTTTCCACAACCACCTGTGATGATGCATCATCCAATCCTTCAATTGAGACACCAAAAGTTACTATGGTTGCTAAGAAGAAGAACAATGTACATAACCATCTAGCAATTATACTAGGCATGGTTGGAGGAGCCACACTAGCCTTTCTCTTAATGTGTGTTTCAGCAATGATATACAAGACTAAACAGAAATATGAAGTCTCAAACACAGCAAGAGCAGAAATGGATACGAGGAACTGGGGTGCAGCAAAAGTCTTTTCCTACAAAGAAATCAAATTAGCTACAAGAAACTTTAAAGAAGTTATAGGACGGGGAAGTTTTGGATCTGTTTATCTCGGAAAACTTCCAGATGGAAAATCAGTAGCTGTCAAAGTTCGGCTGGACAAATCCCAACTGGGTGCTGATTCTTTTATCAATGAGGTTAATCTTTTGTCAAAAATCTGGCATCAAAATCTTGTGTCTTTGGAAGGATTTTGTCATGAATCAAAGCATCAGATACTAGTTTATGAGTACTTGTCTAATGGATCCCTGGCTGATCAACTATATGGTACTAACAATAAAAGAACTTCCTTAAGCTGGGTTCGAAGGTTGAAAATTGCTGTTGATGCAGCAAAAGGATTGGATTATTTACACAATGGAAGTGAACCAAGAATCATACACCGTGATGTTAAGTGTAGTAATATCCTTTTGGATATGGATATGAATGCTAAGGTTTGTGACTTTGGTCTCTCTAAGCAAGTAACCCATGCAGATGCAACTCATGTCACCACTGTTGTCAAGGGCACTGCTGGGTATCTTGATCCAGAGTATTATTCCACTCAACAGCTGACAGAGAAAAGTGATGTCTATAGCTTTGGAATTGTTCTTTTGGAACTCATTTGTGGAAGAGAGCCATTGACTCACTCTGGAACTCCTGACTCATTCAATTTGGTGTTATGGGCCAAGCCCTATTTGCAGGCAGGTGCATTTGAGATTGTGGATGATGACATAAAAGGAACTTTTGATCCCTTGAGTATGAGGCAGGCAGCTTCCATTGCTATAAAGTCAGTGGAGAGGGATGCATCACAAAGACCATCTATTGCAGAGATCTTAGGAGAGCTAAAAGAAGCCTATAGTATTCAACTCAAATTCCTTGAATCTTGTCAAAATGAGAATTGA 2961 0.4043 MKHGNGAKKFGSRMNTLMYTEPPLSSLHSHGSYTNDKSASQVVLSHYADRRSLLSNVLVPLTNLANGLLEEKEEVGISVGDFMDLRDAWASCLLFCSLWFVTFCGQDGFLSLSCGGRTSFSDSSNISWVPDTTYITRGKTTTITYSDGSSSLNISARFFPSSRGRKCYRIPINNATTLVLVRAKFVYKNYDGLGKPPRFSVSIGTATAATINLAKHDPWSEELLWRINKDTLPFCLNAFPNGGSPVISSLEIRPLPQGAYTCGMEDFPNKLLRKSYRIDCGYTNGSIRYPLDPFDRIWDADRSFTPFHLATGFKIQLSFNQFSLVEEPPASVLQTGRVLVRRNILTYNLPLDTLEDYYIILYFAGILPVFPSFDVIINGNLVKSNYTIKSSEISALYVTRKGIRGLNITLKSISFCPLINAFEVYKMVDIPPDASSTTVSALQVIQQSTGLDLGWQDDPCSPSPWDRIDCEGSLVTALDLSDINLRSINPTLGDLLDLKALDLHNTSLLGEIQNLDSLQHLVKLNLSFNQLTSFGVELENLISLQILDLQDNSLTGVVPDSLGELEDLHFLNLENNKLQGPLPESLNKETTEIRASGNLCLTFSTTTCDDASSNPSIETPKVTMVAKKKNNVHNHLAIILGMVGGATLAFLLMCVSAMIYKTKQKYEVSNTARAEMDTRNWGAAKVFSYKEIKLATRNFKEVIGRGSFGSVYLGKLPDGKSVAVKVRLDKSQLGADSFINEVNLLSKIWHQNLVSLEGFCHESKHQILVYEYLSNGSLADQLYGTNNKRTSLSWVRRLKIAVDAAKGLDYLHNGSEPRIIHRDVKCSNILLDMDMNAKVCDFGLSKQVTHADATHVTTVVKGTAGYLDPEYYSTQQLTEKSDVYSFGIVLLELICGREPLTHSGTPDSFNLVLWAKPYLQAGAFEIVDDDIKGTFDPLSMRQAASIAIKSVERDASQRPSIAEILGELKEAYSIQLKFLESCQNEN* 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00071 986 ProSiteProfiles Leucine-rich repeat profile. 520 542 IPR001611 GO:0005515
Rops4g00071 986 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 773 980 - -
Rops4g00071 986 Pfam Protein kinase domain 699 965 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g00071 986 Gene3D Phosphorylase Kinase; domain 1 657 772 - -
Rops4g00071 986 ProSiteProfiles Protein kinase domain profile. 697 979 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g00071 986 Pfam Malectin-like domain 112 427 IPR024788 -
Rops4g00071 986 SUPERFAMILY Protein kinase-like (PK-like) 678 968 IPR011009 -
Rops4g00071 986 SUPERFAMILY L domain-like 438 591 - -
Rops4g00071 986 SMART serkin_6 697 973 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g00071 986 Gene3D Ribonuclease Inhibitor 439 610 IPR032675 -
Rops4g00071 986 Gene3D - 274 428 - -
Rops4g00071 986 SMART LRR_typ_2 518 540 IPR003591 -
Rops4g00071 986 SMART LRR_typ_2 541 564 IPR003591 -
Rops4g00071 986 Pfam Leucine rich repeat 520 578 IPR001611 GO:0005515
Rops4g00071 986 CDD STKc_IRAK 703 970 - -
Rops4g00071 986 ProSitePatterns Serine/Threonine protein kinases active-site signature. 819 831 IPR008271 GO:0004672|GO:0006468
Rops4g00071 986 ProSitePatterns Protein kinases ATP-binding region signature. 703 725 IPR017441 GO:0005524
Rops4g00071 986 FunFam serine/threonine-protein kinase PBS1-like 664 772 - -
Rops4g00071 986 Gene3D Transferase(Phosphotransferase) domain 1 773 983 - -
Rops4g00071 986 PANTHER OS07G0107800 PROTEIN-RELATED 537 972 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00071 Rops-Chr4 2372719 2381424 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00071 93 981 Receptor kinase-like Gene Family AT5G48740 63.330 0.0 1113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Rops4g00071 Malectin_like 2.9e-51 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00071 - - aprc:113850446 1563.13