Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00063 ATGCCAGGTAAAGGTTATGAAGGTGTTGTTACTCGTTGGGGTGTAACTCGCCTTCCACGCAAGGCACACAGAGGTTTAAGGAAGGTTGCTTGTATTGGTGCTTGGCATCCTGCTCATGTTTCTTTCACGGTTGCCAGGGCTGGTCAGAATGGATATCATCATCGCACTGAGTTGAATAAAAAGATATACGGAGTTGGCAAGTCAAGTCAAGAGTCTCATGCAGCCACCACTGAATTTGACAAGACGGAGAAGGATATTACTCCTATGGGTGGATTCCCTCATTATGGTGTGGCGAAGGGTGATTATATAATGTTGAAGGGATGCTGTGTTGGACCGAAGAAGCGGGTTGTCACTCTTCGTCAGTCCCTGCTCAAACAGACATCTCGAGTAGCTTCCGAGAATGGGACCAAAGAGCAAGCCGCCCCTATTCCTCGTGTTGTTCCCATTCCTAAGTTGACTGATAGCTTCTTGGATGGGACAAGCAGTGTGCACTCGGAGGAGCTTCGAAGGGCTTGGGAAGCTGACTCCAACAGTGTTGATGAGTCTTGGAACAATCTCTCTTCGCAGGGGCCTCGCACGTGGGACGTTGGTGGCCATGAGTACGTTGACTATGTCGGTTCATGGGGGCCTACCATCATTGGTCACGCTGATGATCAAGTGCTTGCAGCTCTAGCTGAAACAATGAAAAATGAACCGGCTTTGGGGCACCTTGCACAGAAGCTTGCATGGCCGTGCAACTCGCATGGGCTCTCAAAGCATGGGCAAGATACATGCAACTTGCATGAACATGGAGATGGCAGGGATGGGTTAACCGTGGGAGATTACTGTGGGTCCCTTTAG 840 0.5 MPGKGYEGVVTRWGVTRLPRKAHRGLRKVACIGAWHPAHVSFTVARAGQNGYHHRTELNKKIYGVGKSSQESHAATTEFDKTEKDITPMGGFPHYGVAKGDYIMLKGCCVGPKKRVVTLRQSLLKQTSRVASENGTKEQAAPIPRVVPIPKLTDSFLDGTSSVHSEELRRAWEADSNSVDESWNNLSSQGPRTWDVGGHEYVDYVGSWGPTIIGHADDQVLAALAETMKNEPALGHLAQKLAWPCNSHGLSKHGQDTCNLHEHGDGRDGLTVGDYCGSL* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00063 279 Gene3D Aspartate Aminotransferase, domain 1 179 247 IPR015422 GO:0003824
Rops4g00063 279 Pfam Ribosomal protein L3 3 134 IPR000597 GO:0003735|GO:0005840|GO:0006412
Rops4g00063 279 Gene3D Translation factors 29 138 - -
Rops4g00063 279 FunFam Ribosomal protein L3 42 137 - -
Rops4g00063 279 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 3 134 IPR045077 GO:0003735|GO:0005840|GO:0006412
Rops4g00063 279 FunFam 60S ribosomal protein L3 3 51 - -
Rops4g00063 279 SUPERFAMILY PLP-dependent transferases 186 233 IPR015424 -
Rops4g00063 279 Pfam 2-oxoglutarate dehydrogenase N-terminus 154 185 IPR032106 -
Rops4g00063 279 SUPERFAMILY Translation proteins 3 128 IPR009000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00063 Rops-Chr4 2136831 2138324 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00063 3 134 Cytoplasmic Ribosomal Protein Gene Family AT1G61580 83.333 2.01e-79 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00063 K02925 - osa:4349878 253.832