Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00061 ATGGTCAATGAGCAAAGAACACCTTTGATGGTTGCTGCTACCTATGGTAGCATTGATATTTTGAAATTGATTATTTCTCTATCTGACGCTGATATTAATCGGCCTTGTGGCTTCGACAAGAGCACTGCCCTTCACTGTGCTGCATCAGGTGGGGCTGAAAATGCGGTTGATGCTGTGAAACTGCTTCTAGCAGCAATTGCTTATCCGAATTGTGTGGATGCCAAAGGACATCGTCCTGTGGATGTTATTGTTTTTCCTCCAAAGCTTGAACATGTCAAAAAACAGTCTTGA 291 0.4296 MVNEQRTPLMVAATYGSIDILKLIISLSDADINRPCGFDKSTALHCAASGGAENAVDAVKLLLAAIAYPNCVDAKGHRPVDVIVFPPKLEHVKKQS* 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00061 96 Pfam Ankyrin repeats (many copies) 6 63 IPR002110 GO:0005515
Rops4g00061 96 PANTHER UNKEMPT FAMILY MEMBER 1 68 IPR045234 -
Rops4g00061 96 SMART ANK_2a 39 71 IPR002110 GO:0005515
Rops4g00061 96 SMART ANK_2a 4 34 IPR002110 GO:0005515
Rops4g00061 96 SUPERFAMILY Ankyrin repeat 4 87 IPR036770 -
Rops4g00061 96 Gene3D - 2 92 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00061 Rops-Chr4 2039591 2039881 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00061 1 87 C2H2 Transcription Factor Family AT5G12850 62.069 1.20e-30 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00061 - - ccaj:109796653 158.688